Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_F13
(846 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC057784-1|AAH57784.1| 519|Homo sapiens FLJ14803 protein protein. 33 1.7
BC045618-1|AAH45618.1| 561|Homo sapiens FLJ14803 protein protein. 33 1.7
AK074732-1|BAC11168.1| 561|Homo sapiens protein ( Homo sapiens ... 33 1.7
AK027709-1|BAB55314.1| 561|Homo sapiens protein ( Homo sapiens ... 33 1.7
AK027678-1|BAB55289.1| 203|Homo sapiens protein ( Homo sapiens ... 33 1.7
AK127507-1|BAC87013.1| 130|Homo sapiens protein ( Homo sapiens ... 32 2.3
X89894-1|CAA61984.1| 443|Homo sapiens nuclear receptor protein. 31 4.0
S81243-1|AAB36006.1| 684|Homo sapiens CHN protein. 31 4.0
D78579-1|BAA11419.1| 626|Homo sapiens neuron derived orphan rec... 31 4.0
AL359710-3|CAI95139.1| 443|Homo sapiens nuclear receptor subfam... 31 4.0
AL359710-2|CAI95138.1| 626|Homo sapiens nuclear receptor subfam... 31 4.0
AL359710-1|CAM16648.1| 637|Homo sapiens nuclear receptor subfam... 31 4.0
AL358937-4|CAI95320.1| 626|Homo sapiens nuclear receptor subfam... 31 4.0
AL358937-3|CAM22558.1| 637|Homo sapiens nuclear receptor subfam... 31 4.0
AK128451-1|BAC87447.1| 368|Homo sapiens protein ( Homo sapiens ... 30 9.2
>BC057784-1|AAH57784.1| 519|Homo sapiens FLJ14803 protein protein.
Length = 519
Score = 32.7 bits (71), Expect = 1.7
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 522 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLXAVLQGVRAGG 656
PPSP+I S S +P T+P T+ + LQG+ +GG
Sbjct: 129 PPSPSIQGQSVLSYSPSRSPSTSPKFTTSCMTGYSPQLQGLSSGG 173
>BC045618-1|AAH45618.1| 561|Homo sapiens FLJ14803 protein protein.
Length = 561
Score = 32.7 bits (71), Expect = 1.7
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 522 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLXAVLQGVRAGG 656
PPSP+I S S +P T+P T+ + LQG+ +GG
Sbjct: 129 PPSPSIQGQSVLSYSPSRSPSTSPKFTTSCMTGYSPQLQGLSSGG 173
>AK074732-1|BAC11168.1| 561|Homo sapiens protein ( Homo sapiens
cDNA FLJ90251 fis, clone NT2RM4000115. ).
Length = 561
Score = 32.7 bits (71), Expect = 1.7
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 522 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLXAVLQGVRAGG 656
PPSP+I S S +P T+P T+ + LQG+ +GG
Sbjct: 129 PPSPSIQGQSVLSYSPSRSPSTSPKFTTSCMTGYSPQLQGLSSGG 173
>AK027709-1|BAB55314.1| 561|Homo sapiens protein ( Homo sapiens
cDNA FLJ14803 fis, clone NT2RP4001442. ).
Length = 561
Score = 32.7 bits (71), Expect = 1.7
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 522 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLXAVLQGVRAGG 656
PPSP+I S S +P T+P T+ + LQG+ +GG
Sbjct: 129 PPSPSIQGQSVLSYSPSRSPSTSPKFTTSCMTGYSPQLQGLSSGG 173
>AK027678-1|BAB55289.1| 203|Homo sapiens protein ( Homo sapiens
cDNA FLJ14772 fis, clone NT2RP3004332. ).
Length = 203
Score = 32.7 bits (71), Expect = 1.7
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 522 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLXAVLQGVRAGG 656
PPSP+I S S +P T+P T+ + LQG+ +GG
Sbjct: 129 PPSPSIQGQSVLSYSPSRSPSTSPKFTTSCMTGYSPQLQGLSSGG 173
>AK127507-1|BAC87013.1| 130|Homo sapiens protein ( Homo sapiens
cDNA FLJ45600 fis, clone BRTHA3020369. ).
Length = 130
Score = 32.3 bits (70), Expect = 2.3
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +1
Query: 454 SQCAGHPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPPQ 594
S C G PF S+ S P++S HP + +H Q P + QPPQ
Sbjct: 85 SNCIG-PFS-SYLTSVSLPHSSIHPSIHPSIHPSFIQTPSGLSQPPQ 129
>X89894-1|CAA61984.1| 443|Homo sapiens nuclear receptor protein.
Length = 443
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 242 FQRLYFDLTGTEXKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 403
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>S81243-1|AAB36006.1| 684|Homo sapiens CHN protein.
Length = 684
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 242 FQRLYFDLTGTEXKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 403
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 93 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 144
>D78579-1|BAA11419.1| 626|Homo sapiens neuron derived orphan
receptor protein.
Length = 626
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 242 FQRLYFDLTGTEXKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 403
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-3|CAI95139.1| 443|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 443
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 242 FQRLYFDLTGTEXKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 403
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-2|CAI95138.1| 626|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 626
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 242 FQRLYFDLTGTEXKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 403
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-1|CAM16648.1| 637|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 637
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 242 FQRLYFDLTGTEXKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 403
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 46 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97
>AL358937-4|CAI95320.1| 626|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 626
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 242 FQRLYFDLTGTEXKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 403
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL358937-3|CAM22558.1| 637|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 637
Score = 31.5 bits (68), Expect = 4.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 242 FQRLYFDLTGTEXKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 403
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 46 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97
>AK128451-1|BAC87447.1| 368|Homo sapiens protein ( Homo sapiens
cDNA FLJ46594 fis, clone THYMU3045692. ).
Length = 368
Score = 30.3 bits (65), Expect = 9.2
Identities = 26/105 (24%), Positives = 40/105 (38%)
Frame = +2
Query: 512 MHQATLPCDLGYINPIIKSPIPYTNHPRLNIHFHQSPXXXXXXXXXXGVKASVCHQXLHQ 691
MH +T PC +I+P I + HP ++ H S + + H +H
Sbjct: 25 MHPSTHPCTHPFIHPCIHPSTHVSIHPSIHPCIHASIHPSIHPSVHPSMYPFI-HSYIHP 83
Query: 692 AVSHPPXXWAWLKGVSPPLFSSEW*IKSLXAFIXSLFHAYXVPPL 826
+ HP W+ S L + S+ FI S H PP+
Sbjct: 84 FI-HP-----WIHASSIRLCMNACMHPSIHPFICSSIHPSMHPPI 122
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,281,452
Number of Sequences: 237096
Number of extensions: 2466234
Number of successful extensions: 5544
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5536
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10705443456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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