Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_F08
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    29   0.63 
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.5  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    28   1.5  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   4.4  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    26   7.8  

>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 614 KEVPAKTPMAGQHXRQPE-GEASAVAARPVREDRTDRLDGTEAGRRVRQAARPRLQ 450
           + +P+K P  GQH RQ           + +R++ T     TE G+  RQ + P  Q
Sbjct: 678 ESIPSKQPTEGQHARQESLPSQQTTETKHLRKESTPSKQPTE-GQHTRQESLPSQQ 732


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
 Frame = -2

Query: 428 PPRSNYTFAGAPFP-------PRAEVATPPVIGSERLRLQVPGWRPGEQARRLEGDGAVS 270
           PP SNY  A  P+        P++  A PP   S R R+  P + PG    +    G   
Sbjct: 98  PPSSNYNTAKPPYQTSQFYARPQSSYAPPP---SGRPRISYP-YPPGYMCYKCHNTGYKD 153

Query: 269 SDRPDRDRALRTSQRRDV 216
           S RP    A R  +  DV
Sbjct: 154 SGRPCGRCARRFGRSYDV 171



 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 467 ARPRLQHGPPRVGPPRSNYTFAGAPFPP 384
           ARP+  + PP  G PR +Y     P+PP
Sbjct: 117 ARPQSSYAPPPSGRPRISY-----PYPP 139


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 443 PPRVGPPRSNYTFAGAPFPPRAEVATPP 360
           PP   PPRSN      P PP+   A PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 111 LEAAGSESRPSPSVEGPTSQSERGSST 31
           L   G  SRP+P V+  TS ++ GSST
Sbjct: 217 LRKPGVNSRPAPPVQDVTSSTKYGSST 243


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1060

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 177  YGAPVWCHALTRXNVAALRRPQRAIAVRAIRG 272
            YG    C  LT  N++A  R Q   AVR + G
Sbjct: 1011 YGPSFICKLLTHENISASHRQQLQSAVRNVLG 1042


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 93  ESRPSPSVEGPTSQSERGSS 34
           ES PSPS   P+S S R  S
Sbjct: 59  ESAPSPSTSSPSSASSRSQS 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,608,013
Number of Sequences: 5004
Number of extensions: 46265
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)