Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_F08
         (849 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical ...    31   0.78 
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical...    29   3.2  
AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical...    29   3.2  
AF000263-10|AAM22070.1|  163|Caenorhabditis elegans Hypothetical...    29   3.2  
AF000263-9|AAO21391.2|  184|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical ...    29   3.2  
AC006833-8|AAF60944.1|  360|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    29   5.5  
Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   7.3  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   7.3  
U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CT...    28   7.3  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   7.3  

>AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical
           protein Y44E3A.4 protein.
          Length = 511

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = -2

Query: 500 GTEAGRR----VRQAARPRLQHGPPRVGPPRSNYTFAGAPFPPRAEVATPP 360
           GTE+G R     RQA    + H PP V PP+     A  P P +  VA PP
Sbjct: 255 GTESGARHGSISRQATLTFVSHKPPPVNPPQP----AVPPKPAKISVADPP 301


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +1

Query: 220 SRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRRS 348
           SR     + R R   S+  +P+P RRR  SP + P   RRRRS
Sbjct: 429 SRSKSPPAPRRRRSPSQSKSPAPRRRR--SPSKSPQAPRRRRS 469


>Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical
           protein C27B7.7 protein.
          Length = 1471

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 381 SRGEGRPSEGVVRARRPHSRRSVLEAWSRRLADPSAGL 494
           +RG+ RPS  V  + R ++ +  ++ WSR  A  SAG+
Sbjct: 469 ARGKPRPSISVAISDRKNASQVEVDVWSRLQATSSAGI 506


>AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical
           protein T08B2.5f protein.
          Length = 838

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/45 (44%), Positives = 23/45 (51%)
 Frame = +1

Query: 211 AXTSRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 345
           A  +RR   RS   R GRS   + SPSRRR     R   + RRRR
Sbjct: 27  AREARRSRSRSRDRRGGRSR--SRSPSRRRTSRDRRDDRSSRRRR 69


>AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical
           protein T08B2.5c protein.
          Length = 866

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/45 (44%), Positives = 23/45 (51%)
 Frame = +1

Query: 211 AXTSRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 345
           A  +RR   RS   R GRS   + SPSRRR     R   + RRRR
Sbjct: 55  AREARRSRSRSRDRRGGRSR--SRSPSRRRTSRDRRDDRSSRRRR 97


>AF000263-10|AAM22070.1|  163|Caenorhabditis elegans Hypothetical
           protein T08B2.5d protein.
          Length = 163

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/45 (44%), Positives = 23/45 (51%)
 Frame = +1

Query: 211 AXTSRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 345
           A  +RR   RS   R GRS   + SPSRRR     R   + RRRR
Sbjct: 113 AREARRSRSRSRDRRGGRSR--SRSPSRRRTSRDRRDDRSSRRRR 155


>AF000263-9|AAO21391.2|  184|Caenorhabditis elegans Hypothetical
           protein T08B2.5e protein.
          Length = 184

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/45 (44%), Positives = 23/45 (51%)
 Frame = +1

Query: 211 AXTSRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 345
           A  +RR   RS   R GRS   + SPSRRR     R   + RRRR
Sbjct: 134 AREARRSRSRSRDRRGGRSR--SRSPSRRRTSRDRRDDRSSRRRR 176


>AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical
           protein T08B2.5a protein.
          Length = 924

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/45 (44%), Positives = 23/45 (51%)
 Frame = +1

Query: 211 AXTSRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 345
           A  +RR   RS   R GRS   + SPSRRR     R   + RRRR
Sbjct: 113 AREARRSRSRSRDRRGGRSR--SRSPSRRRTSRDRRDDRSSRRRR 155


>AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical
           protein T08B2.5b protein.
          Length = 925

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/45 (44%), Positives = 23/45 (51%)
 Frame = +1

Query: 211 AXTSRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 345
           A  +RR   RS   R GRS   + SPSRRR     R   + RRRR
Sbjct: 114 AREARRSRSRSRDRRGGRSR--SRSPSRRRTSRDRRDDRSSRRRR 156


>AC006833-8|AAF60944.1|  360|Caenorhabditis elegans Hypothetical
           protein ZK616.8 protein.
          Length = 360

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 24/92 (26%), Positives = 32/92 (34%), Gaps = 1/92 (1%)
 Frame = -2

Query: 395 PFPPRAE-VATPPVIGSERLRLQVPGWRPGEQARRLEGDGAVSSDRPDRDRALRTSQRRD 219
           PF P  +  +TPPV    R RLQ        Q    E D  V    P+  RA + +    
Sbjct: 227 PFSPSKQPTSTPPVSEGNRKRLQTKVVERSNQIES-EMDSFVKKIEPNERRATQYNHSNS 285

Query: 218 VXAGQGVAPYGSXXXXXXXXXXXVEAARHLIG 123
           +       P G+           +   R LIG
Sbjct: 286 LSGSNEAVPPGNVKRSPQKATHPIRTTRSLIG 317


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 156 VVRSMALYGAPVWCHALTRXNVAALRRPQRAIAVRAIRG 272
           +++  ALYGAP W   L+  N+  L    R+ A+RA  G
Sbjct: 689 LIKPTALYGAPAWTSLLSDTNLEKLEIAYRS-ALRACVG 726


>Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical
           protein F58G11.5 protein.
          Length = 675

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +1

Query: 250 SRSGRSEDTAPSPSRRRACSPGRHPGTWRRRRSLPITGGVATSALGGKGAPAKV*FERG 426
           S + RS   +P    +R+ SP R P   RR+RS   +   + S+     +  K   ERG
Sbjct: 514 SEARRSNSRSPPRDHKRSRSPSRSPSPRRRQRSSSNSSRSSGSSSRSSSSSRKSSPERG 572


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = -2

Query: 461 PRLQHGPPRVGPPRSNYTFAGAPFPPRAEVATPPVIGSERLRLQVPGWRP 312
           P +  GPP   PP       G P PP      PP+ G        PG  P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = -2

Query: 461 PRLQHGPPRVGPPRSNYTFAGAPFPPRAEVATPPVIGSERLRLQVPGWRP 312
           P +  GPP   PP       G P PP      PP+ G        PG  P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769


>U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical
           protein C27H5.3 protein.
          Length = 448

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +2

Query: 62  GPSTDGDGRLSEPAASKRRGSRSGGAPPLHGGGAVDGTIRGSR 190
           G  + G    S+P    R G R GG     GGG  DG   GSR
Sbjct: 70  GQGSGGQSGGSDPYGQSRGGGR-GGFGGSRGGGGYDGGRGGSR 111


>AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CTD
           associated factor 6 protein.
          Length = 675

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +1

Query: 250 SRSGRSEDTAPSPSRRRACSPGRHPGTWRRRRSLPITGGVATSALGGKGAPAKV*FERG 426
           S + RS   +P    +R+ SP R P   RR+RS   +   + S+     +  K   ERG
Sbjct: 514 SEARRSNSRSPPRDHKRSRSPSRSPSPRRRQRSSSNSSRSSGSSSRSSSSSRKSSPERG 572


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = -2

Query: 461 PRLQHGPPRVGPPRSNYTFAGAPFPPRAEVATPPVIGSERLRLQVPGWRP 312
           P +  GPP   PP       G P PP      PP+ G        PG  P
Sbjct: 303 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 352


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,320,902
Number of Sequences: 27780
Number of extensions: 321478
Number of successful extensions: 1317
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)