Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_F07
         (848 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z74044-1|CAA98550.1|  548|Caenorhabditis elegans Hypothetical pr...    28   9.6  
Z74039-11|CAA98508.1|  548|Caenorhabditis elegans Hypothetical p...    28   9.6  
AF077307-1|AAC98095.1|  548|Caenorhabditis elegans acetyl cholin...    28   9.6  

>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = -3

Query: 300 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCY 166
           +GT+ +   DIID   +P N +S++ +  +++  R  ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328


>Z74044-1|CAA98550.1|  548|Caenorhabditis elegans Hypothetical
           protein T26H10.1 protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 217 SSGFSATIARNDLPLMLHLSCLLTMPD*SQAQXGSSFPADSPKPVPLT 74
           +SG +    ++  PL +HLS     PD S +      P+ SP P PLT
Sbjct: 408 NSGLALISDKSTDPL-IHLSPTAHQPDESISPSAPPVPSSSPLPPPLT 454


>Z74039-11|CAA98508.1|  548|Caenorhabditis elegans Hypothetical
           protein T26H10.1 protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 217 SSGFSATIARNDLPLMLHLSCLLTMPD*SQAQXGSSFPADSPKPVPLT 74
           +SG +    ++  PL +HLS     PD S +      P+ SP P PLT
Sbjct: 408 NSGLALISDKSTDPL-IHLSPTAHQPDESISPSAPPVPSSSPLPPPLT 454


>AF077307-1|AAC98095.1|  548|Caenorhabditis elegans acetyl choline
           receptor alpha subunitDES-2 protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 217 SSGFSATIARNDLPLMLHLSCLLTMPD*SQAQXGSSFPADSPKPVPLT 74
           +SG +    ++  PL +HLS     PD S +      P+ SP P PLT
Sbjct: 408 NSGLALISDKSTDPL-IHLSPTAHQPDESISPSAPPVPSSSPLPPPLT 454


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,835,399
Number of Sequences: 27780
Number of extensions: 392919
Number of successful extensions: 956
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)