Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_F06
(904 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 324 8e-90
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo... 40 6e-04
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 30 0.39
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.68
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 0.90
SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase Gmh3|Schizo... 28 2.1
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 4.8
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 26 6.4
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 26 6.4
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 324 bits (797), Expect = 8e-90
Identities = 143/196 (72%), Positives = 172/196 (87%)
Frame = +1
Query: 16 KNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVE 195
KNFD+L VRT HYTP+P GN+PLKRPI++YV SG IN+DKP+NPSSHEVV+W+K+IL+VE
Sbjct: 32 KNFDKLLVRTGHYTPIPCGNNPLKRPIAEYVSSGVINLDKPANPSSHEVVAWVKKILRVE 91
Query: 196 KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYAAVFNLHSAVENIQKVTQGLEKL 375
KTGHSGTLDPKVTGCLI+C DRATRLVKSQQ+AGKEY V LH +VE + V +E L
Sbjct: 92 KTGHSGTLDPKVTGCLIICNDRATRLVKSQQSAGKEYVCVLRLHDSVEGERNVASAIETL 151
Query: 376 RGALFQRPPLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLM 555
GALFQRPPLISAVKRQLR+R++Y+SKL++FD ++N+ VFW SCEAG+Y+RT+CVHLGL+
Sbjct: 152 TGALFQRPPLISAVKRQLRIRSIYESKLIEFDNERNLAVFWASCEAGTYMRTLCVHLGLL 211
Query: 556 LGVGGQMIELRRVRSG 603
LGVGG M ELRRVRSG
Sbjct: 212 LGVGGHMQELRRVRSG 227
Score = 66.5 bits (155), Expect = 5e-12
Identities = 32/64 (50%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 648 LDAQWSYENHXDETYLRRVIKXLEGLXIAHXRIFIXDXAVMLVCYGAKVXFQ-VF*IEEG 824
LDAQW Y+N DE+YLRRVI+ LE L + + RI + D AV +CYGAK+ + E G
Sbjct: 242 LDAQWIYDNTRDESYLRRVIRPLESLLVGYKRIVVKDSAVNAICYGAKLMIPGLLRYEAG 301
Query: 825 XEVD 836
EV+
Sbjct: 302 IEVN 305
>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 407
Score = 39.5 bits (88), Expect = 6e-04
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 16/93 (17%)
Frame = +1
Query: 196 KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYAA----------------VFNLH 327
K GH GTLDP +G L+V + T+ + S + K Y A + +
Sbjct: 107 KIGHGGTLDPLASGVLVVGLGTGTKQLSSLLSCMKTYRATALFGCSTDTYDSAGKIIKIA 166
Query: 328 SAVENIQKVTQGLEKLRGALFQRPPLISAVKRQ 426
+ +++ GL+ RG + Q PPL SA+ Q
Sbjct: 167 VHIPTKEEILSGLDAFRGDISQLPPLYSALHIQ 199
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 30.3 bits (65), Expect = 0.39
Identities = 23/79 (29%), Positives = 38/79 (48%)
Frame = +1
Query: 130 DKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYA 309
+KP PS H ++S+ K+E T ++ T K G IV R S +N GKE
Sbjct: 563 EKPVKPSKHNIMSFCILQGKIEVTVNATTFRMKKDGVFIV--PRGN--YYSIKNIGKEAV 618
Query: 310 AVFNLHSAVENIQKVTQGL 366
++ H A + ++ +G+
Sbjct: 619 RLYYTH-ATDTLENKRRGI 636
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 29.5 bits (63), Expect = 0.68
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 103 YVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHS 210
++K + +D+P+N E V+W++ L E GH+
Sbjct: 436 FIKPTLMMLDEPTNHLDLEAVAWLEEYLTHEMEGHT 471
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 29.1 bits (62), Expect = 0.90
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +1
Query: 19 NFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHE 159
++DR + + NH +P P +P K P+ + ++ N D + S+ +
Sbjct: 158 DYDRRSPKRNHRSPSPVSFAPQKSPVENETETNVDNGDTKISESNEK 204
>SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase
Gmh3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 27.9 bits (59), Expect = 2.1
Identities = 22/69 (31%), Positives = 28/69 (40%)
Frame = +1
Query: 121 INVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGK 300
IN D P P SHE+V IL SG + P+ CI+ K N G
Sbjct: 76 INEDDPQEPKSHEIV-----ILLASDGRSSGNMAPETFN---QCIENRINYAK-HHNYGF 126
Query: 301 EYAAVFNLH 327
EY V ++
Sbjct: 127 EYVNVSQMN 135
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 26.6 bits (56), Expect = 4.8
Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 7/97 (7%)
Frame = +3
Query: 132 QTEQPQLPRSSFMDKTYFKSRKDWSFGHARSESYG-------LPYRLHRPRHETRQITTE 290
QT LP S + TY+ K +S + YG LPYR ++ ++T
Sbjct: 204 QTASEHLPEQSLQNTTYYDPSKTYSSVNFEEIEYGKSHEKLDLPYRTTDFIPYSKDLSTS 263
Query: 291 RWQRVCSRFQLAFSRREYSKSHTGLGEAAWSSIPEAP 401
S + + + Y H L E P +P
Sbjct: 264 PEAHRTSIYSYSANLPNYYNEHNELHEHHNPQTPSSP 300
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 52 YTPLPFGNSPLKRPISDYVKSG 117
Y P+ G LKRP+SDY+ G
Sbjct: 14 YKPISPGLRHLKRPVSDYLWKG 35
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +3
Query: 690 YLRRVIKXLEGLXIAHXRIFIXDXAVMLVCYGAKVXFQVF*IEEGXEV 833
Y+ RV+K L L I+H F+ Y + FQ + E E+
Sbjct: 1211 YMERVVKLLRALKISHQLYFMPLCVYNFEFYDGGLMFQAINLAEKSEL 1258
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,464,916
Number of Sequences: 5004
Number of extensions: 73411
Number of successful extensions: 225
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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