Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_F06
(904 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U59151-1|AAB94299.1| 514|Homo sapiens Cbf5p homolog protein. 331 2e-90
BC010015-1|AAH10015.1| 514|Homo sapiens dyskeratosis congenita ... 331 2e-90
BC009928-1|AAH09928.1| 514|Homo sapiens dyskeratosis congenita ... 331 2e-90
AJ224481-1|CAA11970.1| 514|Homo sapiens dyskerin protein. 331 2e-90
AJ010395-1|CAB51168.1| 524|Homo sapiens dyskerin protein. 331 2e-90
AF067023-1|AAD20232.1| 514|Homo sapiens dyskerin protein. 331 2e-90
AF067008-1|AAD11815.1| 514|Homo sapiens dyskerin protein. 331 2e-90
BC030601-1|AAH30601.1| 349|Homo sapiens TruB pseudouridine (psi... 56 2e-07
AL355340-1|CAH73219.1| 349|Homo sapiens TruB pseudouridine (psi... 56 2e-07
AK223567-1|BAD97287.1| 349|Homo sapiens TruB pseudouridine (psi... 56 2e-07
AF448144-1|AAL40350.1| 349|Homo sapiens TruB pseudouridine synt... 56 2e-07
Z34277-1|CAA84031.1| 477|Homo sapiens mucin protein. 31 4.3
AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein. 31 5.7
>U59151-1|AAB94299.1| 514|Homo sapiens Cbf5p homolog protein.
Length = 514
Score = 331 bits (814), Expect = 2e-90
Identities = 145/201 (72%), Positives = 180/201 (89%)
Frame = +1
Query: 16 KNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVE 195
KNFD+LNVRT HYTPL G++PLKR I DY+++GFIN+DKPSNPSSHEVV+WI+RIL+VE
Sbjct: 57 KNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVE 116
Query: 196 KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYAAVFNLHSAVENIQKVTQGLEKL 375
KTGHSGTLDPKVTGCLIVCI+RATRLVKSQQ+AGKEY + LH+A+E ++++ LE L
Sbjct: 117 KTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETL 176
Query: 376 RGALFQRPPLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLM 555
GALFQRPPLI+AVKRQLRVRT+Y+SK++++D ++ +G+FWVSCEAG+YIRT+CVHLGL+
Sbjct: 177 TGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLL 236
Query: 556 LGVGGQMIELRRVRSGIQGRE 618
LGVGGQM ELRRVRSG+ +
Sbjct: 237 LGVGGQMQELRRVRSGVMSEK 257
Score = 70.5 bits (165), Expect = 8e-12
Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 648 LDAQWSYENHXDETYLRRVIKXLEGLXIAHXRIFIXDXAVMLVCYGAKVXFQ-VF*IEEG 824
LDAQW Y+NH DE+YLRRV+ LE L +H R+ + D AV +CYGAK+ V E+G
Sbjct: 267 LDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDG 326
Query: 825 XEVD 836
EV+
Sbjct: 327 IEVN 330
>BC010015-1|AAH10015.1| 514|Homo sapiens dyskeratosis congenita 1,
dyskerin protein.
Length = 514
Score = 331 bits (814), Expect = 2e-90
Identities = 145/201 (72%), Positives = 180/201 (89%)
Frame = +1
Query: 16 KNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVE 195
KNFD+LNVRT HYTPL G++PLKR I DY+++GFIN+DKPSNPSSHEVV+WI+RIL+VE
Sbjct: 57 KNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVE 116
Query: 196 KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYAAVFNLHSAVENIQKVTQGLEKL 375
KTGHSGTLDPKVTGCLIVCI+RATRLVKSQQ+AGKEY + LH+A+E ++++ LE L
Sbjct: 117 KTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETL 176
Query: 376 RGALFQRPPLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLM 555
GALFQRPPLI+AVKRQLRVRT+Y+SK++++D ++ +G+FWVSCEAG+YIRT+CVHLGL+
Sbjct: 177 TGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLL 236
Query: 556 LGVGGQMIELRRVRSGIQGRE 618
LGVGGQM ELRRVRSG+ +
Sbjct: 237 LGVGGQMQELRRVRSGVMSEK 257
Score = 70.5 bits (165), Expect = 8e-12
Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 648 LDAQWSYENHXDETYLRRVIKXLEGLXIAHXRIFIXDXAVMLVCYGAKVXFQ-VF*IEEG 824
LDAQW Y+NH DE+YLRRV+ LE L +H R+ + D AV +CYGAK+ V E+G
Sbjct: 267 LDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDG 326
Query: 825 XEVD 836
EV+
Sbjct: 327 IEVN 330
>BC009928-1|AAH09928.1| 514|Homo sapiens dyskeratosis congenita 1,
dyskerin protein.
Length = 514
Score = 331 bits (814), Expect = 2e-90
Identities = 145/201 (72%), Positives = 180/201 (89%)
Frame = +1
Query: 16 KNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVE 195
KNFD+LNVRT HYTPL G++PLKR I DY+++GFIN+DKPSNPSSHEVV+WI+RIL+VE
Sbjct: 57 KNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVE 116
Query: 196 KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYAAVFNLHSAVENIQKVTQGLEKL 375
KTGHSGTLDPKVTGCLIVCI+RATRLVKSQQ+AGKEY + LH+A+E ++++ LE L
Sbjct: 117 KTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETL 176
Query: 376 RGALFQRPPLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLM 555
GALFQRPPLI+AVKRQLRVRT+Y+SK++++D ++ +G+FWVSCEAG+YIRT+CVHLGL+
Sbjct: 177 TGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLL 236
Query: 556 LGVGGQMIELRRVRSGIQGRE 618
LGVGGQM ELRRVRSG+ +
Sbjct: 237 LGVGGQMQELRRVRSGVMSEK 257
Score = 68.5 bits (160), Expect = 3e-11
Identities = 32/64 (50%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 648 LDAQWSYENHXDETYLRRVIKXLEGLXIAHXRIFIXDXAVMLVCYGAKVXFQ-VF*IEEG 824
LDAQW Y+NH DE+YLRR + LE L +H R+ + D AV +CYGAK+ V E+G
Sbjct: 267 LDAQWLYDNHKDESYLRRFVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDG 326
Query: 825 XEVD 836
EV+
Sbjct: 327 IEVN 330
>AJ224481-1|CAA11970.1| 514|Homo sapiens dyskerin protein.
Length = 514
Score = 331 bits (814), Expect = 2e-90
Identities = 145/201 (72%), Positives = 180/201 (89%)
Frame = +1
Query: 16 KNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVE 195
KNFD+LNVRT HYTPL G++PLKR I DY+++GFIN+DKPSNPSSHEVV+WI+RIL+VE
Sbjct: 57 KNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVE 116
Query: 196 KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYAAVFNLHSAVENIQKVTQGLEKL 375
KTGHSGTLDPKVTGCLIVCI+RATRLVKSQQ+AGKEY + LH+A+E ++++ LE L
Sbjct: 117 KTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETL 176
Query: 376 RGALFQRPPLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLM 555
GALFQRPPLI+AVKRQLRVRT+Y+SK++++D ++ +G+FWVSCEAG+YIRT+CVHLGL+
Sbjct: 177 TGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLL 236
Query: 556 LGVGGQMIELRRVRSGIQGRE 618
LGVGGQM ELRRVRSG+ +
Sbjct: 237 LGVGGQMQELRRVRSGVMSEK 257
Score = 70.5 bits (165), Expect = 8e-12
Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 648 LDAQWSYENHXDETYLRRVIKXLEGLXIAHXRIFIXDXAVMLVCYGAKVXFQ-VF*IEEG 824
LDAQW Y+NH DE+YLRRV+ LE L +H R+ + D AV +CYGAK+ V E+G
Sbjct: 267 LDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDG 326
Query: 825 XEVD 836
EV+
Sbjct: 327 IEVN 330
>AJ010395-1|CAB51168.1| 524|Homo sapiens dyskerin protein.
Length = 524
Score = 331 bits (814), Expect = 2e-90
Identities = 145/201 (72%), Positives = 180/201 (89%)
Frame = +1
Query: 16 KNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVE 195
KNFD+LNVRT HYTPL G++PLKR I DY+++GFIN+DKPSNPSSHEVV+WI+RIL+VE
Sbjct: 57 KNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVE 116
Query: 196 KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYAAVFNLHSAVENIQKVTQGLEKL 375
KTGHSGTLDPKVTGCLIVCI+RATRLVKSQQ+AGKEY + LH+A+E ++++ LE L
Sbjct: 117 KTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETL 176
Query: 376 RGALFQRPPLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLM 555
GALFQRPPLI+AVKRQLRVRT+Y+SK++++D ++ +G+FWVSCEAG+YIRT+CVHLGL+
Sbjct: 177 TGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLL 236
Query: 556 LGVGGQMIELRRVRSGIQGRE 618
LGVGGQM ELRRVRSG+ +
Sbjct: 237 LGVGGQMQELRRVRSGVMSEK 257
Score = 70.5 bits (165), Expect = 8e-12
Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 648 LDAQWSYENHXDETYLRRVIKXLEGLXIAHXRIFIXDXAVMLVCYGAKVXFQ-VF*IEEG 824
LDAQW Y+NH DE+YLRRV+ LE L +H R+ + D AV +CYGAK+ V E+G
Sbjct: 267 LDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDG 326
Query: 825 XEVD 836
EV+
Sbjct: 327 IEVN 330
>AF067023-1|AAD20232.1| 514|Homo sapiens dyskerin protein.
Length = 514
Score = 331 bits (814), Expect = 2e-90
Identities = 145/201 (72%), Positives = 180/201 (89%)
Frame = +1
Query: 16 KNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVE 195
KNFD+LNVRT HYTPL G++PLKR I DY+++GFIN+DKPSNPSSHEVV+WI+RIL+VE
Sbjct: 57 KNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVE 116
Query: 196 KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYAAVFNLHSAVENIQKVTQGLEKL 375
KTGHSGTLDPKVTGCLIVCI+RATRLVKSQQ+AGKEY + LH+A+E ++++ LE L
Sbjct: 117 KTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETL 176
Query: 376 RGALFQRPPLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLM 555
GALFQRPPLI+AVKRQLRVRT+Y+SK++++D ++ +G+FWVSCEAG+YIRT+CVHLGL+
Sbjct: 177 TGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLL 236
Query: 556 LGVGGQMIELRRVRSGIQGRE 618
LGVGGQM ELRRVRSG+ +
Sbjct: 237 LGVGGQMQELRRVRSGVMSEK 257
Score = 70.5 bits (165), Expect = 8e-12
Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 648 LDAQWSYENHXDETYLRRVIKXLEGLXIAHXRIFIXDXAVMLVCYGAKVXFQ-VF*IEEG 824
LDAQW Y+NH DE+YLRRV+ LE L +H R+ + D AV +CYGAK+ V E+G
Sbjct: 267 LDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDG 326
Query: 825 XEVD 836
EV+
Sbjct: 327 IEVN 330
>AF067008-1|AAD11815.1| 514|Homo sapiens dyskerin protein.
Length = 514
Score = 331 bits (814), Expect = 2e-90
Identities = 145/201 (72%), Positives = 180/201 (89%)
Frame = +1
Query: 16 KNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVE 195
KNFD+LNVRT HYTPL G++PLKR I DY+++GFIN+DKPSNPSSHEVV+WI+RIL+VE
Sbjct: 57 KNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVE 116
Query: 196 KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYAAVFNLHSAVENIQKVTQGLEKL 375
KTGHSGTLDPKVTGCLIVCI+RATRLVKSQQ+AGKEY + LH+A+E ++++ LE L
Sbjct: 117 KTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETL 176
Query: 376 RGALFQRPPLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLM 555
GALFQRPPLI+AVKRQLRVRT+Y+SK++++D ++ +G+FWVSCEAG+YIRT+CVHLGL+
Sbjct: 177 TGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLL 236
Query: 556 LGVGGQMIELRRVRSGIQGRE 618
LGVGGQM ELRRVRSG+ +
Sbjct: 237 LGVGGQMQELRRVRSGVMSEK 257
Score = 70.5 bits (165), Expect = 8e-12
Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 648 LDAQWSYENHXDETYLRRVIKXLEGLXIAHXRIFIXDXAVMLVCYGAKVXFQ-VF*IEEG 824
LDAQW Y+NH DE+YLRRV+ LE L +H R+ + D AV +CYGAK+ V E+G
Sbjct: 267 LDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDG 326
Query: 825 XEVD 836
EV+
Sbjct: 327 IEVN 330
>BC030601-1|AAH30601.1| 349|Homo sapiens TruB pseudouridine (psi)
synthase homolog 1 (E. coli) protein.
Length = 349
Score = 56.0 bits (129), Expect = 2e-07
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 33/178 (18%)
Frame = +1
Query: 169 WIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYAAVFNLHSAVENI- 345
W KR + K GH GTLD G L+V I T+++ S + K Y A+ L A + +
Sbjct: 104 WTKRKKQTLKIGHGGTLDSAARGVLVVGIGSGTKMLTSMLSGSKRYTAIGELGKATDTLD 163
Query: 346 -----------QKVTQG-----LEKLRGALFQRPPLISAVKRQ-LRVRTVYD-SKLLDFD 471
K+TQ L+K G + Q PPL SA+K+ R+ T+ ++++
Sbjct: 164 STGRVTEEKPYDKITQEDIEGILQKFTGNIMQVPPLYSALKKDGQRLSTLMKRGEVVEAK 223
Query: 472 QDKNIGVFWVS--------------CEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 603
+ + V+ +S C G YIR++ +G L ++EL R + G
Sbjct: 224 PARPVTVYSISLQKFQPPFFTLDVECGGGFYIRSLVSDIGKELSSCANVLELTRTKQG 281
>AL355340-1|CAH73219.1| 349|Homo sapiens TruB pseudouridine (psi)
synthase homolog 1 (E. coli) protein.
Length = 349
Score = 56.0 bits (129), Expect = 2e-07
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 33/178 (18%)
Frame = +1
Query: 169 WIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYAAVFNLHSAVENI- 345
W KR + K GH GTLD G L+V I T+++ S + K Y A+ L A + +
Sbjct: 104 WTKRKKQTLKIGHGGTLDSAARGVLVVGIGSGTKMLTSMLSGSKRYTAIGELGKATDTLD 163
Query: 346 -----------QKVTQG-----LEKLRGALFQRPPLISAVKRQ-LRVRTVYD-SKLLDFD 471
K+TQ L+K G + Q PPL SA+K+ R+ T+ ++++
Sbjct: 164 STGRVTEEKPYDKITQEDIEGILQKFTGNIMQVPPLYSALKKDGQRLSTLMKRGEVVEAK 223
Query: 472 QDKNIGVFWVS--------------CEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 603
+ + V+ +S C G YIR++ +G L ++EL R + G
Sbjct: 224 PARPVTVYSISLQKFQPPFFTLDVECGGGFYIRSLVSDIGKELSSCANVLELTRTKQG 281
>AK223567-1|BAD97287.1| 349|Homo sapiens TruB pseudouridine (psi)
synthase homolog 1 variant protein.
Length = 349
Score = 56.0 bits (129), Expect = 2e-07
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 33/178 (18%)
Frame = +1
Query: 169 WIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYAAVFNLHSAVENI- 345
W KR + K GH GTLD G L+V I T+++ S + K Y A+ L A + +
Sbjct: 104 WTKRKKQTLKIGHGGTLDSAARGVLVVGIGSGTKMLTSMLSGSKRYTAIGELGKATDTLD 163
Query: 346 -----------QKVTQG-----LEKLRGALFQRPPLISAVKRQ-LRVRTVYD-SKLLDFD 471
K+TQ L+K G + Q PPL SA+K+ R+ T+ ++++
Sbjct: 164 STGRVTEEKPYDKITQEDIEGILQKFTGNIMQVPPLYSALKKDGQRLSTLMKRGEVVEAK 223
Query: 472 QDKNIGVFWVS--------------CEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 603
+ + V+ +S C G YIR++ +G L ++EL R + G
Sbjct: 224 PARPVTVYSISLQKFQPPFFTLDVECGGGFYIRSLVSDIGKELSSCANVLELTRTKQG 281
>AF448144-1|AAL40350.1| 349|Homo sapiens TruB pseudouridine
synthase-like protein 1 protein.
Length = 349
Score = 56.0 bits (129), Expect = 2e-07
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 33/178 (18%)
Frame = +1
Query: 169 WIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYAAVFNLHSAVENI- 345
W KR + K GH GTLD G L+V I T+++ S + K Y A+ L A + +
Sbjct: 104 WTKRKKQTLKIGHGGTLDSAARGVLVVGIGSGTKMLTSMLSGSKRYTAIGELGKATDTLD 163
Query: 346 -----------QKVTQG-----LEKLRGALFQRPPLISAVKRQ-LRVRTVYD-SKLLDFD 471
K+TQ L+K G + Q PPL SA+K+ R+ T+ ++++
Sbjct: 164 STGRVTEEKPYDKITQEDIEGILQKFTGNIMQVPPLYSALKKDGQRLSTLMKRGEVVEAK 223
Query: 472 QDKNIGVFWVS--------------CEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSG 603
+ + V+ +S C G YIR++ +G L ++EL R + G
Sbjct: 224 PARPVTVYSISLQKFQPPFFTLDVECGGGFYIRSLVSDIGKELSSCANVLELTRTKQG 281
>Z34277-1|CAA84031.1| 477|Homo sapiens mucin protein.
Length = 477
Score = 31.5 bits (68), Expect = 4.3
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Frame = -3
Query: 515 PASQLTQNTPIFLSWSKSRSLLSYTVLTRSCRFTADISGGLWN--RAPRSFSKPCVTF*I 342
P+ + T T SW KSR+ T T S T+ S + AP + + T
Sbjct: 139 PSGRATSPTQSTSSWQKSRTTTLVTTSTTSTPQTSTTSAPTTSTTSAPTTSTTSAPTTST 198
Query: 341 FSTAECKLKTAAYSLPAFCCDLTSLVARSMQTIRQPVTFGSSVP 210
ST + + +A S +++ AR+ I P T +S P
Sbjct: 199 TSTPQTSISSAPTSSTTSAPTSSTISARTTSIISAPTTSTTSFP 242
>AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.
Length = 1349
Score = 31.1 bits (67), Expect = 5.7
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Frame = -3
Query: 515 PASQLTQNTPIFLSWSKSRSLLSYTVLTRSCRFTADISGGLWN--RAPRSFSKPCVTF*I 342
P+ + T T SW KSR+ T T S T+ S + AP + + T
Sbjct: 315 PSGRATSPTQSTSSWQKSRTTTLVTTSTTSTPQTSTTSAPTTSTTSAPTTSTTSAPTTST 374
Query: 341 FSTAECKLKTAAYSLPAFCCDLTSLVARSMQTIRQPVTFGSSVP 210
ST + + +A S +++ AR+ I P T +S P
Sbjct: 375 TSTPQTSISSAPTSSTTSAPTSSTISARTTSIISAPTTSTTSSP 418
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,946,132
Number of Sequences: 237096
Number of extensions: 2687345
Number of successful extensions: 6065
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6065
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11659288620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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