Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_F06
         (904 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92803-7|CAB07244.1|  445|Caenorhabditis elegans Hypothetical pr...   309   2e-84

>Z92803-7|CAB07244.1|  445|Caenorhabditis elegans Hypothetical
           protein K01G5.5 protein.
          Length = 445

 Score =  309 bits (759), Expect = 2e-84
 Identities = 142/197 (72%), Positives = 166/197 (84%)
 Frame = +1

Query: 16  KNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVE 195
           KN+D+LNVRTNHYTP   G SPLKR I +Y+ SGF N+DKPSNPSSHEVVSWIKRIL+ E
Sbjct: 45  KNYDKLNVRTNHYTPHVEGVSPLKRDIKNYISSGFFNLDKPSNPSSHEVVSWIKRILRCE 104

Query: 196 KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYAAVFNLHSAVENIQKVTQGLEKL 375
           KTGHSGTLDPKV+GCLIVCIDR TRL KSQQ AGKEY  +F LH  VE+ +KV Q LEKL
Sbjct: 105 KTGHSGTLDPKVSGCLIVCIDRTTRLAKSQQGAGKEYICIFKLHEEVEDDRKVKQALEKL 164

Query: 376 RGALFQRPPLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHLGLM 555
            GALFQRPPLISAVKRQLR+RTVY++K +++D  + +G+F   CE+G+Y+RT+CVHLGL+
Sbjct: 165 TGALFQRPPLISAVKRQLRIRTVYENKFIEYDPAQQMGIFNCICESGTYVRTICVHLGLI 224

Query: 556 LGVGGQMIELRRVRSGI 606
           LG GGQM ELRR RSGI
Sbjct: 225 LGCGGQMQELRRNRSGI 241



 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 19/49 (38%), Positives = 31/49 (63%)
 Frame = +3

Query: 648 LDAQWSYENHXDETYLRRVIKXLEGLXIAHXRIFIXDXAVMLVCYGAKV 794
           LDAQ+  +   DE+Y+R +++ LE L   H R+ + D  +  +CYGAK+
Sbjct: 255 LDAQYLLDTQKDESYMRHIVRPLEALLTQHKRVVVKDSCINAICYGAKI 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,300,655
Number of Sequences: 27780
Number of extensions: 416162
Number of successful extensions: 1115
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)