Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_F06
         (904 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.54 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.7  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   6.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   8.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   8.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 217 ACPNDQSFRLLKYVLSMKLLRGSWGCSVCR 128
           A P D +  + +YV+  K+ +GSW   + R
Sbjct: 897 AAPYDGNSPIKRYVIEYKISKGSWETDIDR 926



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +1

Query: 70   GNSPLKRPISDY-VKSGF--INVDKPSNPSSHEVVSWI 174
            GNSP+KR + +Y +  G    ++D+   P S + V+ +
Sbjct: 902  GNSPIKRYVIEYKISKGSWETDIDRVLVPGSQQNVAGV 939


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +3

Query: 252 HRPRHETRQITTERWQRVCSRFQLAFSRREY 344
           HR RH T  ++T  + R+    Q   S   Y
Sbjct: 193 HRQRHSTIHLSTGNYSRLACEIQFVRSMGYY 223


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +1

Query: 142 NPSSHEVVSWIKRI 183
           +P +H++  W+KR+
Sbjct: 335 SPQTHKMAPWVKRV 348


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +1

Query: 142 NPSSHEVVSWIKRI 183
           +P +H++  W+KR+
Sbjct: 335 SPQTHKMAPWVKRV 348


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 431 RSCRFTADISGGLWNRAPRSFSKPCVTF 348
           +SCR+TA ++G   N AP S + P V +
Sbjct: 146 KSCRYTASLAG---NVAPAS-ADPMVNY 169


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 429 ACQDGVRQ*TPGFRPGQEYWGVLG 500
           AC   V   T   +    YWG+LG
Sbjct: 321 ACMRSVDAKTISVQQWNSYWGILG 344


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 429 ACQDGVRQ*TPGFRPGQEYWGVLG 500
           AC   V   T   +    YWG+LG
Sbjct: 321 ACMRSVDAKTISVQQWNSYWGILG 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,711
Number of Sequences: 438
Number of extensions: 4677
Number of successful extensions: 21
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)