Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_F04
(857 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.51
07_01_0284 - 2082249-2082256,2082496-2083009 31 1.6
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 2.1
04_03_0923 + 20843477-20845044,20846081-20846996 30 2.1
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.6
04_03_0919 + 20820010-20821707 29 3.6
12_02_1038 - 25596027-25596393,25596492-25596660,25597283-255973... 29 6.3
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 8.3
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.3
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 8.3
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.51
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 433 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 269
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>07_01_0284 - 2082249-2082256,2082496-2083009
Length = 173
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/60 (36%), Positives = 30/60 (50%)
Frame = +3
Query: 483 QPPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARFKFGSRMHNSDEMD 662
+PPP + +AP+ I AP AW LQF + I P + RL F FG + E+D
Sbjct: 73 EPPPPPSTTAPI--IAAP-----AWAPLLQFAATQQIIPISARL--FVFGVSKKRTTELD 123
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 331 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 447
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>04_03_0923 + 20843477-20845044,20846081-20846996
Length = 827
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +1
Query: 607 ADLHVSSSVLGCTIVTKWIRD*QKNIQYVRXRSVGCDXSVXCG 735
A +H V G +V W+ + Q + Y R V CD CG
Sbjct: 259 AIMHAGIDVFGRGLVATWLEESQDWLIYYRQPEVHCDVYAICG 301
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 346 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 257
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>04_03_0919 + 20820010-20821707
Length = 565
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/59 (27%), Positives = 22/59 (37%)
Frame = +1
Query: 559 H*HSNFYAVRQLAQRHADLHVSSSVLGCTIVTKWIRD*QKNIQYVRXRSVGCDXSVXCG 735
H Y + L+ +H V G +V W+ + Q Y R V CD CG
Sbjct: 13 HNDQEAYFIYTLSDETTMMHAGIDVYGRGLVGIWLEELQDWFIYYRQPVVNCDVYAICG 71
>12_02_1038 -
25596027-25596393,25596492-25596660,25597283-25597349,
25597617-25597794,25599157-25599228,25599311-25599717,
25600035-25600740,25600829-25600998,25601963-25602022,
25602385-25602435
Length = 748
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -2
Query: 190 SYSTSEEKR*QNNISRRHFMTTDLLKLSRV-NITSSNCLHSCLGRF*KNDMSSRDISLC 17
S S E N++ R T+ ++++ R NI S NC +C + +S+ I LC
Sbjct: 97 SVQLSRESHSPNSVRTRTGATSSIIRMIRCKNIVSENCSITCYLNDSTSSKASQPIQLC 155
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 218 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 373
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 515 GRGERSPRRWLQPRLAVPRQASTSVPRTP 429
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -2
Query: 460 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 293
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,774,435
Number of Sequences: 37544
Number of extensions: 561994
Number of successful extensions: 1570
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1569
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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