Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_F03
(869 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0296 + 2383578-2384220,2384754-2384829,2384942-2385057,238... 32 0.52
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936... 31 1.6
07_03_1747 + 29188568-29188715,29188793-29189541 29 3.7
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899... 29 3.7
04_03_0736 - 19145428-19145474,19145608-19145721,19146707-191478... 29 4.8
08_02_0813 + 21459776-21461128 29 6.4
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182... 29 6.4
02_01_0054 - 404464-405152,406087-406618 29 6.4
01_06_1147 + 34892415-34893702,34894051-34894676 29 6.4
04_01_0530 - 6928528-6929500,6929514-6930964 28 8.5
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.5
>08_01_0296 +
2383578-2384220,2384754-2384829,2384942-2385057,
2385957-2386522
Length = 466
Score = 32.3 bits (70), Expect = 0.52
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +3
Query: 528 DEMDXVIDKRIYSMFESGAWGCDGSVQCGAEPGPWRGGSS 647
D++D + R F GAW CDGS + GA+P RG S
Sbjct: 381 DKIDRELLHRSEGQFTPGAW-CDGSSEGGADPCSSRGEDS 419
>04_04_0959 +
29692740-29693035,29693102-29693267,29693433-29693612,
29693703-29693771,29693888-29694088,29694187-29694240,
29694325-29694386,29694488-29694620,29694789-29694899,
29695008-29695104,29695638-29695714,29696129-29696194,
29696431-29696583,29697392-29697447,29697524-29697584,
29697656-29697766,29698010-29698144,29698217-29698447,
29699001-29699075,29699161-29699282,29699381-29699453,
29699538-29699642,29699728-29699895,29700079-29700148,
29700224-29700375,29700574-29700651,29700744-29700836,
29700961-29701098,29701237-29701276,29701350-29701423,
29701777-29701911,29702345-29702464,29702778-29702939
Length = 1287
Score = 30.7 bits (66), Expect = 1.6
Identities = 23/80 (28%), Positives = 30/80 (37%)
Frame = +1
Query: 70 CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPAFETC*HS*VRVHRANTGRSSNE 249
CG V H L V LP R + A C + +R HR ++ RS
Sbjct: 20 CGLAAVAAGQVRHSPLLRAPVPGLLPERQAPEGRRPLAASRCLPTCLRRHRRSSRRSHRR 79
Query: 250 LDRQTTELERRGSGAAALGW 309
R++ L RR LGW
Sbjct: 80 CRRRSPRLWRRSGSGFLLGW 99
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +1
Query: 364 PPPGTTLSAPVYLITGPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 516
PPP TT++ V L P+ S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVL---PTAAASCHQMQDQFVCARAAETTTCCWSESESLPG 260
>05_05_0155 +
22787658-22787930,22788029-22788096,22789600-22789915,
22790207-22790323
Length = 257
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -2
Query: 652 PRELPPRHGPGSAPHWTEPSHPHAP 578
P PP H P PH P HPH P
Sbjct: 34 PHHHPPHHHP-HPPHHHPPHHPHPP 57
>04_03_0736 -
19145428-19145474,19145608-19145721,19146707-19147870,
19150251-19150383
Length = 485
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = +1
Query: 601 LSSAVQSQDRGEVEAR---VAMFQMSFPGDAPRH-TRWRP 708
LSSA Q G+ E +AM+ GD PRH RW P
Sbjct: 289 LSSAFHPQSDGQSEVTNKIIAMYLRCLTGDRPRHWLRWLP 328
>08_02_0813 + 21459776-21461128
Length = 450
Score = 28.7 bits (61), Expect = 6.4
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +3
Query: 279 QGEWGCSTWLVSSERLXRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISM 458
+G++ C WL + R P LL+ TT R V+ W K+ IS P+S+
Sbjct: 237 RGDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSI 288
Query: 459 QL 464
+L
Sbjct: 289 EL 290
>04_01_0159 -
1824343-1824405,1824485-1824595,1825282-1825448,
1825853-1826029,1826404-1826656
Length = 256
Score = 28.7 bits (61), Expect = 6.4
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = -1
Query: 425 YPGDGPVIRYTGAESVVPGGGCSRV*QYHVRPXQAFRGHQPSAAAPLPLRSNSVVCRSNS 246
+P PV T + S GGCS + P AFRG+ + P+ + V CR+ S
Sbjct: 52 WPSPNPV---TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107
>02_01_0054 - 404464-405152,406087-406618
Length = 406
Score = 28.7 bits (61), Expect = 6.4
Identities = 31/103 (30%), Positives = 38/103 (36%), Gaps = 7/103 (6%)
Frame = -2
Query: 316 EDTSQVLQPHSPCVPTQSFVDPIHL-------KICLYSHGGLGLTNVSMSQMQGQVDYDF 158
E S + P V + +VDP L K +YS G L L ++ S G D
Sbjct: 260 EGFSAAVAPTRAAVGSPGYVDPFFLRTGIVSKKSDVYSFGVLLLEAITGSPAAGIPGPDG 319
Query: 157 GVGGGVPIVRCEERVDHEGQ*CCVFAFCRTSYSTSEEKXVTRI 29
G GGG R RV EG Y +E V RI
Sbjct: 320 GAGGGNLTARLLPRVRTEGVDGLADRRLGDDYDAAEAGDVARI 362
>01_06_1147 + 34892415-34893702,34894051-34894676
Length = 637
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +1
Query: 313 PRNACXGLTWYC*TRLQPPPGTTLSAPVYLITGPSPG 423
P N+ G + C LQP PGT S P T PSPG
Sbjct: 210 PANSFLGNAFLCGFPLQPCPGTAPS-PSPSPTSPSPG 245
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 43 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 183
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 393 GRGERSPRRWLQPRLAVPRQAXTSVPRTP 307
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,839,712
Number of Sequences: 37544
Number of extensions: 555156
Number of successful extensions: 1930
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1930
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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