Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_F02
(775 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 0.77
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 31 1.3
07_03_1136 + 24218601-24218734,24218769-24219906 29 3.1
01_03_0005 + 11568545-11569119,11569179-11569191 28 7.2
09_02_0495 + 9880714-9881196 28 9.5
06_03_0095 - 16575938-16576585,16577028-16577219,16577294-165773... 28 9.5
02_05_0686 - 30900748-30902167,30903442-30904742 28 9.5
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 31.5 bits (68), Expect = 0.77
Identities = 17/47 (36%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Frame = -1
Query: 775 PPPPPXXXXXGGXXXXXXXXXXXXXXG--GXXPPPPXGGGXXXPXGG 641
PPPP GG G G PPPP G G P GG
Sbjct: 1186 PPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGGRGLPAPPGG 1232
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Frame = -3
Query: 773 PPPPXXXXXGGXXPXXXXXXXXXXXGGXXPPPPXGXGG--XXPXXGGXXXXPTP 618
PPPP G P PP P G GG P GG P P
Sbjct: 1110 PPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAP 1163
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Frame = -1
Query: 319 PAPIXPXGFPNSSRFVDPNSI*RFWPXXXXKXFP---HGGLGLTNVSMSQMQGQVDYDFG 149
P P FP S ++ P + + + +GG L ++Q G Y +G
Sbjct: 63 PMQTPPPHFPMSGGYMSPGTPPSMYLGGGAPPYGTSLYGGPALPRYGIAQFPGGSGYPYG 122
Query: 148 VGGRLPI 128
GGRLP+
Sbjct: 123 YGGRLPM 129
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 642 PPXGXXXPPPXGGGGXXPP 698
PP G P P GGGG PP
Sbjct: 91 PPGGGGAPGPLGGGGARPP 109
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = +3
Query: 639 PPPXGXXXPPPXGGGGXXPPXXXXXXXXXXXXXXPPXXXXXGGGG 773
P P G P GGGG P PP GGGG
Sbjct: 98 PGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGG 142
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = +1
Query: 643 PXXGXXPPXPXGGGGXXPPXXXXXXXXXXXGXXPPXXXXXGGGG 774
P G P GGGG PP G PP GGGG
Sbjct: 100 PLGGGGARPPGGGGGGGPPSLPPGAGGGG-GARPPAPGGGGGGG 142
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -1
Query: 697 GGXXPPPPXGGGXXXPXGGGXXXXXP 620
GG P P GGG P GGG P
Sbjct: 93 GGGGAPGPLGGGGARPPGGGGGGGPP 118
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = +1
Query: 643 PXXGXXPPXPXGGGGXXPPXXXXXXXXXXXGXXPPXXXXXGGGG 774
P G P P GGGG PP G PP GGG
Sbjct: 91 PPGGGGAPGPLGGGGARPP-------GGGGGGGPPSLPPGAGGG 127
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = -1
Query: 772 PPPPXXXXXGGXXXXXXXXXXXXXXGGXXPPPPXGGGXXXPXGGGXXXXXPP 617
PPPP GG PPP GGG GGG PP
Sbjct: 70 PPPPSYPSGGGGGGGGGTVMYTSP-----PPPYSGGGGGSSTGGGGIYYPPP 116
>09_02_0495 + 9880714-9881196
Length = 160
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Frame = -3
Query: 773 PPPPXXXXXGGXXPXXXXXXXXXXXGGXXPPPPXG--XGGXXPXXGG 639
PPPP GG PPPP G G P GG
Sbjct: 51 PPPPPAGSSSSSSSGGGDGGAGGLFGGTYPPPPPGVMPGAFAPPFGG 97
>06_03_0095 - 16575938-16576585,16577028-16577219,16577294-16577392,
16577496-16577618,16577717-16577929,16578143-16578251,
16578339-16578427,16578604-16578880,16578974-16579084,
16579160-16580508,16581218-16581631
Length = 1207
Score = 27.9 bits (59), Expect = 9.5
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +1
Query: 1 YWMSTTYIILVTVSPHLCYS 60
YW+ T + ++ T+ P+ CY+
Sbjct: 1120 YWLVTLFAVMATLIPYFCYA 1139
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/53 (28%), Positives = 15/53 (28%)
Frame = -1
Query: 775 PPPPPXXXXXGGXXXXXXXXXXXXXXGGXXPPPPXGGGXXXPXGGGXXXXXPP 617
PPPPP G PPPP G P G PP
Sbjct: 326 PPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPP 378
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,339,065
Number of Sequences: 37544
Number of extensions: 492039
Number of successful extensions: 1532
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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