Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_F01
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    29   0.68 
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    27   2.8  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   3.6  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   8.4  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 244 VRVHRADTGRSSNELDRQTTDLERRGMGL 330
           +R H+   GR+  ELDR+ T L++R   L
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERAL 46


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 6   GFTRDSFNRSVVIKCRRLILFGLPFLLTCCYS 101
           GF RD FN    I C  L+ F    +   C++
Sbjct: 411 GFLRDQFNFITSIACLSLLCFSASLMANSCFT 442


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 322 FPCVPSQSFVDPIHLKICQYPHGGL 248
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 383 AVXRQASTSVPXTPAKWCSPIPLRSKSVVCRSNS 282
           +V +   +  P    ++CS  PL++K   C  NS
Sbjct: 17  SVNKPFRSRTPSPEREYCSDCPLQAKGSACNGNS 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,120,613
Number of Sequences: 5004
Number of extensions: 34965
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)