Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_F01
         (904 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    30   2.9  
03_01_0218 - 1717246-1717892,1717995-1718163,1718262-1720022,172...    29   5.1  
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305...    29   6.7  
08_02_0049 + 11632868-11632948,11633230-11633322,11634937-116350...    29   6.7  
03_02_0412 - 8219712-8219837,8221451-8221543,8221826-8221906           29   6.7  
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707...    28   8.8  

>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -1

Query: 346 HQPSGAAPFPCVPSQSFVDPIHLKICQYPHGGLGLTNVSMXQM-QGQVDYDFGVGG 182
           H P  AA  P VPS+    P  L +     GG GL   S   +  G  + D G+GG
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61


>03_01_0218 -
           1717246-1717892,1717995-1718163,1718262-1720022,
           1720531-1720610,1720854-1720981,1721004-1721012,
           1723701-1723742,1725891-1726002,1726358-1726514,
           1726678-1726762,1727628-1727713,1727998-1728042
          Length = 1106

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 380 VXRQASTSVPXTPAKWCSPIP 318
           V ++ ST VP +PA WCS  P
Sbjct: 833 VLQENSTEVPPSPASWCSSPP 853


>08_02_1291 +
           25930056-25930067,25930289-25930334,25930434-25930546,
           25930645-25930930,25931357-25931421,25931642-25931693,
           25931774-25931883,25932611-25932641,25932853-25933004,
           25934622-25934840
          Length = 361

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 259 HGGLGLTNVSMXQMQGQVDYDFGVGGRLPI 170
           +GG  L    + Q  G   Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129


>08_02_0049 +
           11632868-11632948,11633230-11633322,11634937-11635030,
           11635063-11635292
          Length = 165

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +2

Query: 281 MNWIDKRLTWNAGEWGCTTWLVSXERLWXPDVXLLNAAATTR-RGLRLSGARVSNNGS 451
           M  +D R TW         W+ + +RLW P   L+ A A     G+    A + N G+
Sbjct: 5   MELLDARSTWR--------WVAADDRLWAPKAYLMRAGAVIHSHGMETCIATMLNTGA 54


>03_02_0412 - 8219712-8219837,8221451-8221543,8221826-8221906
          Length = 99

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +2

Query: 281 MNWIDKRLTWNAGEWGCTTWLVSXERLWXPDVXLLNAAATTR-RGLRLSGARVSNNGS 451
           M  +D R TW         W+ + +RLW P   L+ A A     G+    A + N G+
Sbjct: 5   MELLDARSTWR--------WVAADDRLWAPKAYLMRAGAVIHSHGMETCIATMLNTGA 54


>07_03_0809 -
           21669632-21669637,21669871-21670131,21670573-21670752,
           21671458-21672819
          Length = 602

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 131 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLXHANIRESESTVRILADLQMN 286
           +L   +D L+  YD+  PPDS+ V        HA      + +R+L  + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,528,299
Number of Sequences: 37544
Number of extensions: 307464
Number of successful extensions: 743
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)