Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_F01
(904 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 47 2e-07
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 45 1e-06
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 45 1e-06
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 45 1e-06
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 43 4e-06
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 43 4e-06
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 43 4e-06
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 43 4e-06
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 43 4e-06
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 43 4e-06
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 41 2e-05
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 40 3e-05
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 40 4e-05
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 39 7e-05
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 38 1e-04
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 35 9e-04
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 35 9e-04
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 35 0.001
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 34 0.002
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 29 0.058
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 28 0.13
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 47.2 bits (107), Expect = 2e-07
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 8/110 (7%)
Frame = +2
Query: 89 LLL*LDAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLXHA---NIRES 247
++L L A C + D LL+ Y+R P S +VV L L L N+++
Sbjct: 6 IILILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQ 65
Query: 248 ESTVRILADLQMNWIDKRLTWNAGEWGCTTWL-VSXERLWXPDVXLLNAA 394
T + L+ W D + W+ E+G T L V E +W PD+ L N A
Sbjct: 66 ILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNA 113
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 44.8 bits (101), Expect = 1e-06
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLTWNAGEWGCTTWL-VSXERLWXPDVXLLNAAATTRR 409
++ E + A L++ W+D L WN E+G L ++ +LW PD+ + N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 410 GLRLSGARVSNNGS 451
G + V++NGS
Sbjct: 85 GTYQTSVVVTHNGS 98
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 44.8 bits (101), Expect = 1e-06
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLTWNAGEWGCTTWL-VSXERLWXPDVXLLNAAATTRR 409
++ E + A L++ W+D L WN E+G L ++ +LW PD+ + N+A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 410 GLRLSGARVSNNGS 451
G + V++NGS
Sbjct: 153 GTYQTNVVVTHNGS 166
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 44.8 bits (101), Expect = 1e-06
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLTWNAGEWGCTTWL-VSXERLWXPDVXLLNAAATTRR 409
++ E + A L++ W+D L WN E+G L ++ +LW PD+ + N+A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 410 GLRLSGARVSNNGS 451
G + V++NGS
Sbjct: 153 GTYQTNVVVTHNGS 166
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 42.7 bits (96), Expect = 4e-06
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLTWNAGEWGCTTWL-VSXERLWXPDVXLLNAAATTRR 409
++ E + A L++ W+D L WN E+G L ++ +LW PD+ + N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 410 GLRLSGARVSNNGS 451
G + V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 42.7 bits (96), Expect = 4e-06
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLTWNAGEWGCTTWL-VSXERLWXPDVXLLNAAATTRR 409
++ E + A L++ W+D L WN E+G L ++ +LW PD+ + N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 410 GLRLSGARVSNNGS 451
G + V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 42.7 bits (96), Expect = 4e-06
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLTWNAGEWGCTTWL-VSXERLWXPDVXLLNAAATTRR 409
++ E + A L++ W+D L WN E+G L ++ +LW PD+ + N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 410 GLRLSGARVSNNGS 451
G + V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 42.7 bits (96), Expect = 4e-06
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLTWNAGEWGCTTWL-VSXERLWXPDVXLLNAAATTRR 409
++ E + A L++ W+D L WN E+G L ++ +LW PD+ + N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 410 GLRLSGARVSNNGS 451
G + V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 42.7 bits (96), Expect = 4e-06
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLTWNAGEWGCTTWL-VSXERLWXPDVXLLNAAATTRR 409
++ E + A L++ W+D L WN E+G L ++ +LW PD+ + N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 410 GLRLSGARVSNNGS 451
G + V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 42.7 bits (96), Expect = 4e-06
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Frame = +2
Query: 116 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLXHANIRESESTVRILADLQ 280
C++ TS S + L YDR+ P+ K ++ L + H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 281 MNWIDKRLTWNAGEWGCTTWL-VSXERLWXPDVXL 382
+ W LTW + E+ + V +W PD+ +
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 40.7 bits (91), Expect = 2e-05
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +2
Query: 275 LQMNWIDKRLTWNAGEWGCTTWL-VSXERLWXPDVXLLNAAATTRRGLRLSGARVSNNGS 451
L++ W D + WN ++G L + RLW PDV + N+A G + V NNG+
Sbjct: 76 LKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGT 135
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 39.9 bits (89), Expect = 3e-05
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Frame = +2
Query: 143 MIDSLLATYDRESPPDSKIVVNLTLHLX-------HANIRESESTVRILADLQMNWIDKR 301
+ D LL+ Y+R P LT+ L N++ T + ++ W D +
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVW--VEQRWNDYK 94
Query: 302 LTWNAGEWGCTTWL-VSXERLWXPDVXLLNAA 394
L WN E+G L V E +W PD+ L N A
Sbjct: 95 LKWNPEEYGGVEMLYVPSENIWLPDIVLYNNA 126
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 39.5 bits (88), Expect = 4e-05
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Frame = +2
Query: 143 MIDSLLATYDRESPP----DSKIVVNLTLHLXH---ANIRESESTVRILADLQMNWIDKR 301
+ D LL+ Y+R P ++ V + L L N++ T + ++ W D +
Sbjct: 24 LYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYK 81
Query: 302 LTWNAGEWGCTTWL-VSXERLWXPDVXLLNAA 394
L WN ++G L V E +W PD+ L N A
Sbjct: 82 LKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA 113
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 38.7 bits (86), Expect = 7e-05
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Frame = +2
Query: 122 NATSLSLMIDSLLATYDRESPPD-----SKIVVNLTLHLXHANIRESESTVRILADLQMN 286
N +++S ++D+LL YD PD + + V++ + I E + T + + +
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSM-GPISEVDMTYSMDCYFRQS 60
Query: 287 WIDKRLTWNAGEWGCTTWLVSXERLWXPDVXLLN 388
W+D+RL + G+ + R+W PD N
Sbjct: 61 WVDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 37.9 bits (84), Expect = 1e-04
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Frame = +2
Query: 116 CENATSLSLMIDSLLATYDRESPPDSKIVVNLTL-------HLXHANIRESESTVRILAD 274
C + D LL+ Y++ P + LT+ L N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 275 LQMNWIDKRLTWNAGEWGCTTWL-VSXERLWXPDVXLLNAA 394
++ +W D +L W+ E+G L V + +W PD+ L N A
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNA 117
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 35.1 bits (77), Expect = 9e-04
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +2
Query: 194 KIVVNLTL-HLXHANIRESESTVRILADLQMNWIDKRLTWNAGEWGCTTWL-VSXERLWX 367
++ + L L L N++ T + ++ +W D +L W E+G L V + +W
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 368 PDVXLLNAA 394
PD+ L N A
Sbjct: 113 PDIVLYNNA 121
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 35.1 bits (77), Expect = 9e-04
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +2
Query: 194 KIVVNLTL-HLXHANIRESESTVRILADLQMNWIDKRLTWNAGEWGCTTWL-VSXERLWX 367
++ + L L L N++ T + ++ +W D +L W E+G L V + +W
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 368 PDVXLLNAA 394
PD+ L N A
Sbjct: 113 PDIVLYNNA 121
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 34.7 bits (76), Expect = 0.001
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 197 IVVNLTLHLXHANIRESESTVRILADLQMNWIDKRLTWNAGEW-GCTTWLVSXERLWXPD 373
+V L+LH ++ E + + W D L WNA E+ G V R+W PD
Sbjct: 33 VVFGLSLHHI-IDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 374 VXLLNAA 394
L N A
Sbjct: 92 TILYNNA 98
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 34.3 bits (75), Expect = 0.002
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +2
Query: 194 KIVVNLTLHLXHA-NIRESESTVRILADLQMNWIDKRLTWNAGEWGCTTWL-VSXERLWX 367
K+ VN L N+ E ++ L+ W D +L W+ ++G L + +++W
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 368 PDVXLLNAA 394
PD+ L N A
Sbjct: 111 PDIVLFNNA 119
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 29.1 bits (62), Expect = 0.058
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Frame = +2
Query: 122 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LXHANIRESESTVRILADLQMNW 289
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 290 IDKRLTWNAGEWGCTTWLVSXE---RLWXPDVXLLN 388
D RL + G T V E +W PD +N
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVN 102
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 27.9 bits (59), Expect = 0.13
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Frame = +2
Query: 122 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LXHANIRESESTVRILADLQMNW 289
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 290 IDKRLTWNAGEWGCTTWLVSXE---RLWXPDVXLLN 388
D RL + G T V E +W PD +N
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVN 102
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,910
Number of Sequences: 438
Number of extensions: 2982
Number of successful extensions: 44
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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