Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_E24
         (824 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.5  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.0  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.9  

>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +1

Query: 349 YRDAYLVNLEGCRFFLPPLXSKIPVTVDLCW 441
           Y+ + +V  +G   ++PP   K    +D+ W
Sbjct: 87  YQTSVVVTHDGSCLYVPPGIFKSTCKIDIAW 117


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +1

Query: 349 YRDAYLVNLEGCRFFLPPLXSKIPVTVDLCW 441
           Y+ + +V  +G   ++PP   K    +D+ W
Sbjct: 87  YQTSVVVTHDGSCLYVPPGIFKSTCKIDITW 117


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 823 PPPPPXXGG 797
           PPPPP  GG
Sbjct: 376 PPPPPIRGG 384


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +1

Query: 349 YRDAYLVNLEGCRFFLPPLXSKIPVTVDLCW 441
           Y+ + +V  +G   ++PP   K    +D+ W
Sbjct: 87  YQTSVVVTHDGSCLYVPPGIFKSTCKMDIAW 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,159
Number of Sequences: 438
Number of extensions: 4032
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)