Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_E19
         (845 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    27   0.29 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.5  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    23   4.7  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   4.7  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   4.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   8.2  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 652 HITLAVVIGLKTIRVGTTPLVMTDP 578
           H  LA  +G+K + VG   + MTDP
Sbjct: 136 HALLAFTLGVKQLIVGVNKMDMTDP 160


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 197  LLGVQQDNVYPQAYIRSEIRTLLSLA 274
            L+ VQ +N YP+  +  E+R  L  A
Sbjct: 1160 LIIVQAENAYPEVELDRELRPYLRTA 1185


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 652 HITLAVVIGLKTIRVGTTPLVMTDP 578
           H  LA  +G+K + VG   +  T+P
Sbjct: 63  HALLAFTLGVKQLIVGVNKMDSTEP 87


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 652 HITLAVVIGLKTIRVGTTPLVMTDP 578
           H  LA  +G+K + VG   +  T+P
Sbjct: 79  HALLAFTLGVKQLIVGVNKMDSTEP 103


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 652 HITLAVVIGLKTIRVGTTPLVMTDP 578
           H  LA  +G+K + VG   +  T+P
Sbjct: 136 HALLAFTLGVKQLIVGVNKMDSTEP 160


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 586 TDPLLRSKFHLRFALALISCNSLLR 512
           ++  + SKF L F   L+S N LLR
Sbjct: 216 SESTIDSKFGLGFTTDLLSYNILLR 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,220
Number of Sequences: 438
Number of extensions: 4184
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)