Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_E07
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.37 
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    29   0.64 
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.6  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    27   3.4  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    27   3.4  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    26   6.0  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    26   6.0  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    26   7.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 36/120 (30%), Positives = 46/120 (38%), Gaps = 13/120 (10%)
 Frame = +1

Query: 127 SSPMTPPSTTRVGRRRCFIDDFRPQLPPWDS---------GSGSGASTLTPRKAQRCSSK 279
           S P  PP ++RV       +  RP  PP  S         G+GS  S+L P      S+ 
Sbjct: 288 SKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNA 347

Query: 280 GVALRTPR*ASLSRLGASTPPPPPFAQSRCT---TSPYRGPRR-SNI*ASPSTVG*HSAP 447
             ++  P        G S PPPPP   +  T     P    R  SN  A P  +   SAP
Sbjct: 348 AGSIPLPP------QGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 737 QSGFMRHFXKAGRXENLSSWPAGNYIPESWGTKWKASP 850
           ++GF RH       ++   +PAG+Y+P++ G   K  P
Sbjct: 564 RAGFARHHIHVTPYKDGQIYPAGDYVPQTSGEPTKGLP 601


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 391 PRRSNI*ASPSTVG*HSAPTSRRYAIVPPSS*DVSTR 501
           P  SN  +  ST   H  P+S+R +++PP++ ++ +R
Sbjct: 314 PSGSNQASLRSTSTIHYTPSSKRISVIPPNTSNIGSR 350


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 404 FDLRGPRYGLVVHRDWANGGGGGVDAPSRERD 309
           F+L    Y L    +W  GG  GV AP+ E D
Sbjct: 160 FELDVSNYPLPEGEEWMVGGSFGVMAPNNEED 191


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
 Frame = +3

Query: 90  RXYPGSPETHLALFADDTAIYYSCRKKALLHRRL---QTAATTMGQWFRKWRIDINPTKS 260
           R +P + +   +LF+D++ +  S    +L          ++  +   F++ +       S
Sbjct: 323 RSHPQTQQNESSLFSDNSMVNSSSNSFSLFPNATLPNPPSSELLTTPFQQIKPPSQVFMS 382

Query: 261 TAVLFKRGRPPNTTLSIPLPTRRVNTPAPAVRP 359
           T +L K+ RP       PLP    + P+  VRP
Sbjct: 383 TGLLSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 452 DVGAECHPTVEGDA*IFDLRGPRYGLVVHRDWANG 348
           DV A C  +++     +DLR PR+ +    DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 288 PPNTTLSIPLPTRRVNTPAPAVRPITMYDQPIPWAPKVKYLGVT 419
           PP  + + P PT   NTPA      T+    IP  P V  +G T
Sbjct: 211 PPGFSPATPAPTSAANTPA------TIAATSIPPVPNVPLVGAT 248


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 222 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPL 317
           F+ W+    P+ S  +L ++G PP + LS  L
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSEL 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,500,746
Number of Sequences: 5004
Number of extensions: 75053
Number of successful extensions: 230
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)