Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_E06
         (986 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    33   0.062
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.11 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.1  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   7.1  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   9.4  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 33.1 bits (72), Expect = 0.062
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +1

Query: 493 PXGGXXPPPPPPXFXXXXXPPXP 561
           P G   PPPPPP F     PP P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPP 27


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.11
 Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
 Frame = +1

Query: 487 PPPX---GGXXPPPPPPXFXXXXXPPXP 561
           PPP    GG  PPPPPP       PP P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 30.7 bits (66), Expect = 0.33
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +1

Query: 487 PPPXGGXXPPPPPPXFXXXXXPPXPXXXXGGXGXXPP 597
           P P     P PPP        PP P     G G  PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 11/16 (68%), Positives = 11/16 (68%), Gaps = 2/16 (12%)
 Frame = +1

Query: 487 PPPXG--GXXPPPPPP 528
           PPP G  G  PPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPP 780


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 490 PPXGGXXPPPPPP 528
           PP G   PPPPPP
Sbjct: 354 PPQGRSAPPPPPP 366


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
 Frame = +1

Query: 484 GPPPXGGXXPPPPPP----XFXXXXXPPXPXXXXGGXG 585
           G    GG  PPPPPP     F      P P    G  G
Sbjct: 298 GDSANGGLPPPPPPPPPSNDFWKDSNEPAPADNKGDMG 335


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
 Frame = +1

Query: 487 PPPX----GGXXPPPPPPXFXXXXXPPXPXXXXGGXGXXPPXF 603
           PPP     G   PPPP         PP P     G    PP F
Sbjct: 300 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPF 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.152    0.525 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,845,195
Number of Sequences: 5004
Number of extensions: 24101
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)