Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_D24
         (970 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    79   1e-15
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    28   1.7  
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    27   4.0  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.9  
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    26   9.2  
SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity fac...    26   9.2  

>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 78.6 bits (185), Expect = 1e-15
 Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
 Frame = +3

Query: 3   LVEYLQRLSKCAVPAGIVEFIKLCTLSYGKVKLVLKHNRYLVESKHVEVLQKLLKDPVIQ 182
           ++  L RLSK  +P  IV+FI+ CT+SYGKVKLVLK NRY +ES    VL+ LL+DPVI 
Sbjct: 152 IIAVLDRLSKTPIPPSIVDFIRACTVSYGKVKLVLKKNRYFIESGDASVLRLLLRDPVIG 211

Query: 183 QCRLRRDGDEDLLSNDLPAKPTTSLAK---PGEEKPPAANGAVPDDISQFYQQLDKDDDE 353
             R+          +  P+       K     +     A  +  D++      L +++D+
Sbjct: 212 PLRIDYSTQSSKQKSSKPSNEDNVEDKKDITNDSSKETAEKSSSDELFSAVVGLQEEEDD 271

Query: 354 EE 359
           E+
Sbjct: 272 ED 273


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +3

Query: 204 GDEDLLSNDLPAKPTTSLAKPGEEKPPAANGAVPDDISQFYQQLDKDDDEEETSGCYCQP 383
           GD +LL N +  KPTTS   P    PPA +  + +   +  +++ K ++ +  S  +  P
Sbjct: 527 GDVELLCNSIEGKPTTSKITP--SIPPAFDIHIIEG-EELLEEMKKRENVKHNSQNFASP 583


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
 Frame = +3

Query: 57  EFIKLCTLSYGK-VKLVLKHNRYLVESKHVEVLQKLLKDPVIQQCRLRRDGDEDL-LSND 230
           +F  L  L YG  +      + Y  +S+ +  L  +  D      R   DGD+   L+ D
Sbjct: 211 QFRILRLLRYGSLIDPDTPESAYTFDSQDLGTLDLVFSDEFNYPGRAFYDGDDQFWLATD 270

Query: 231 LPAKPTTSLAKPGEEKPPAANGAVPDDISQFY 326
           L    TT       + P  ANG +   +  FY
Sbjct: 271 LHYAATTDYEYYDADTPTTANGTLRLRMDAFY 302


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
 Frame = +3

Query: 213 DLLSNDLPAK-----PTTSLAKPGEEKPP-AANGAVPDDIS 317
           D+++N  P +     P+T L + G+E+PP  A  AVP + S
Sbjct: 417 DVINNSTPKEETEESPSTELPETGKEQPPNKAEPAVPTEAS 457


>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +3

Query: 192 LRRDGDEDLLSNDLPAKPTTSLAKP--GEEKPPAANGAVPDDISQ 320
           L  + DED L+N+L       L     G EKPP    AVP   SQ
Sbjct: 150 LNAEIDEDELANELDELQQMELDSKMLGAEKPPVHTPAVPAVPSQ 194


>SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +3

Query: 66  KLCTLSYGKVKLVLKHNRYLVESKHVEVLQKLLKDPVIQ 182
           KLCTLS G++K V +   Y    + V V + L  DP IQ
Sbjct: 102 KLCTLSDGRIKWVHQDGYYWQTYEDVYVSKVL--DPRIQ 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,739
Number of Sequences: 5004
Number of extensions: 44086
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)