Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_D24
(970 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0338 + 28538951-28538966,28539073-28539183,28539311-285394... 69 7e-12
07_03_1099 + 23945867-23945872,23945951-23946547,23948928-23949341 29 4.2
06_01_1105 + 9102059-9102167,9103770-9103907,9104125-9104267,910... 29 4.2
05_04_0403 + 20997191-20998816 29 4.2
07_01_0677 + 5087584-5087589,5088890-5089172,5093561-5093704,509... 29 7.4
04_03_0961 + 21263735-21263773,21264157-21264279,21266774-212668... 29 7.4
02_05_0669 - 30755406-30756081,30756869-30756933,30757040-307572... 29 7.4
02_05_0425 - 28845707-28846189,28846262-28846403,28846496-288469... 29 7.4
10_03_0036 - 7286425-7286463,7286686-7286974,7287306-7288192,728... 28 9.7
09_06_0195 - 21477817-21478119,21478216-21478366,21478459-214786... 28 9.7
07_01_0694 - 5248381-5249118 28 9.7
06_03_0554 - 22057957-22058014,22058093-22058426,22058446-220589... 28 9.7
>01_06_0338 +
28538951-28538966,28539073-28539183,28539311-28539479,
28540841-28541063,28541148-28541204,28541718-28541861,
28541939-28542019,28543026-28543113,28543579-28543943,
28544011-28544086,28544174-28544367,28544846-28545009,
28545080-28545152,28545237-28545350,28545839-28545919,
28546043-28546102,28546180-28546289,28546325-28546501,
28546599-28546683
Length = 795
Score = 68.5 bits (160), Expect = 7e-12
Identities = 37/91 (40%), Positives = 51/91 (56%)
Frame = +3
Query: 3 LVEYLQRLSKCAVPAGIVEFIKLCTLSYGKVKLVLKHNRYLVESKHVEVLQKLLKDPVIQ 182
++ + +LSK +P I++FI T +YGKVKLVLK NRY VES EVL+ LLKD +I
Sbjct: 126 IISVMSKLSKTKLPREIIDFIHASTANYGKVKLVLKKNRYFVESPFPEVLKTLLKDDII- 184
Query: 183 QCRLRRDGDEDLLSNDLPAKPTTSLAKPGEE 275
CR R ++ + + T G E
Sbjct: 185 -CRARISPEDSVGAPSFTISKTAGEMASGHE 214
>07_03_1099 + 23945867-23945872,23945951-23946547,23948928-23949341
Length = 338
Score = 29.5 bits (63), Expect = 4.2
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = +3
Query: 180 QQCRLRRDGDEDLLSNDLPAKPTTSLAKPGEEKPPAANGAVPDDISQFYQQLDKDDDEEE 359
Q+CR + G+ D N+ PT S G AANG DD + + + +D +EEE
Sbjct: 275 QRCRPKA-GNWDQSFNERKGVPTLS---DGLHLHAAANGGTDDDARKKRRCVGEDMEEEE 330
Query: 360 TSGCYC 377
S C
Sbjct: 331 ESDSAC 336
>06_01_1105 +
9102059-9102167,9103770-9103907,9104125-9104267,
9104362-9104515,9104610-9104839,9105382-9105471,
9105606-9105779,9105873-9106010,9106212-9106349,
9106450-9106511,9106744-9106972,9108531-9109364
Length = 812
Score = 29.5 bits (63), Expect = 4.2
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = -2
Query: 312 CRR-AQRRSPPVVFLHLVWRGTWSAWRAGRWTADPRRRRVAACTVESLDLSIASAVPPRA 136
CRR A+ R P F HLV G + W A R+ + ++ S S S+
Sbjct: 573 CRRPAEPRPPSYPFFHLVGHGVFPGTGRSGWGAAGRKLPPNSPSISSFHSSPTSSKLAGL 632
Query: 135 YSRLDTCYVLTPASL 91
+D +L+PA +
Sbjct: 633 GGLIDPRCILSPARI 647
>05_04_0403 + 20997191-20998816
Length = 541
Score = 29.5 bits (63), Expect = 4.2
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +3
Query: 201 DGDEDLLSNDLPAKPTTSLAKPGEEKPPAANGAVPDDISQFYQQLDKDDDEEETSGC 371
DG + +KP+ SLA P PAA +PD ++ F + D + D+ C
Sbjct: 25 DGSKQQQQLRYSSKPS-SLALPRLRLLPAAGALLPDRVTPFSYEEDDESDDHPREEC 80
>07_01_0677 +
5087584-5087589,5088890-5089172,5093561-5093704,
5094167-5095269
Length = 511
Score = 28.7 bits (61), Expect = 7.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 138 HVEVLQKLLKDPVIQQCRLRRDG 206
HV+ LLKDP + C L RDG
Sbjct: 280 HVQSTLTLLKDPRVNPCLLNRDG 302
>04_03_0961 +
21263735-21263773,21264157-21264279,21266774-21266847,
21266939-21267095,21267554-21267694,21267739-21267823,
21268810-21268903,21269041-21269239,21269515-21269549,
21270076-21270631,21270722-21270882,21271704-21271718,
21273078-21273330,21273439-21273562,21273688-21273788,
21274870-21274938,21275060-21275191,21275270-21275404,
21275489-21275551,21275636-21275881,21276007-21276285
Length = 1026
Score = 28.7 bits (61), Expect = 7.4
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 198 RDGDEDL-LSNDLPAKPTT-SLAKPGEEKPPAANGAVPDDISQFYQQLDKDDDEEETSGC 371
R G++ + +L + PTT S+ + +PP + + + F + K EE+ + C
Sbjct: 32 RQGEDQVGFLQELRSMPTTESMTEEERMEPPPPPPYIHIETNDFLHRRHKRQKEEDIAVC 91
Query: 372 YCQPXLL 392
CQ LL
Sbjct: 92 ECQYNLL 98
>02_05_0669 -
30755406-30756081,30756869-30756933,30757040-30757209,
30757313-30757496,30758536-30758619,30758740-30758938,
30760200-30760441,30761811-30762053
Length = 620
Score = 28.7 bits (61), Expect = 7.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 228 RWTADPRRRRVAACTVESLDLSIAS 154
RW A RRRR AAC V L + +
Sbjct: 455 RWCAGDRRRRPAACVVAGAQLHVVA 479
>02_05_0425 -
28845707-28846189,28846262-28846403,28846496-28846971,
28848817-28848848,28849429-28849572,28849770-28849841,
28850281-28850296
Length = 454
Score = 28.7 bits (61), Expect = 7.4
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3
Query: 228 DLPAKPTTSLAKPGEEKPPAANGAVPDDISQFYQQLDKDDDEE 356
DLP K +P + P+A+G VP + Y D DDDEE
Sbjct: 164 DLPPKVNHRSFQPRVIRSPSASG-VPSIGEEDYDDDDDDDDEE 205
>10_03_0036 -
7286425-7286463,7286686-7286974,7287306-7288192,
7288280-7288726,7288805-7288830,7288984-7289512
Length = 738
Score = 28.3 bits (60), Expect = 9.7
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = +3
Query: 210 EDLLSNDLPAKPTTSLAKPGEEKPPAANGAVP--DDISQFYQ---QLDKDDDEEET 362
+DL+ + A+PTT+ ++P +A A P D +QFY Q D D E+ T
Sbjct: 416 KDLIEIRVTARPTTAPGSRPPKRPASAPSAPPAQDRHAQFYDVQLQYDTDFGEDRT 471
>09_06_0195 -
21477817-21478119,21478216-21478366,21478459-21478696,
21478786-21478996,21479162-21479361,21479453-21479545,
21479722-21481093
Length = 855
Score = 28.3 bits (60), Expect = 9.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 264 VWRGTWSAWRAGRWT 220
+W G+ AWRAG WT
Sbjct: 213 IWNGSRPAWRAGVWT 227
>07_01_0694 - 5248381-5249118
Length = 245
Score = 28.3 bits (60), Expect = 9.7
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = +3
Query: 219 LSNDLPAKP---TTSLAKPGEE--KPPAANGAVPD 308
L++D PA P TTS +P E PPAA+G PD
Sbjct: 55 LASDSPAAPPSTTTSSDEPAESPPPPPAASGVDPD 89
>06_03_0554 -
22057957-22058014,22058093-22058426,22058446-22058977,
22059211-22059459,22059551-22059563,22059608-22059942
Length = 506
Score = 28.3 bits (60), Expect = 9.7
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Frame = +3
Query: 210 EDLLSNDLPAKPTTSLAKPGEEKPPAANGAVP--DDISQFYQ---QLD---KDDDEEETS 365
+DL+ + A+PTT+L ++P +A A P D +Q Y Q D ++D E S
Sbjct: 281 KDLIEIRVTARPTTALGGSPPKRPASAPSAPPAQDRHAQSYDVQLQYDTNFREDHTEADS 340
Query: 366 GCYCQPXLL--ALKVGSRPNRX*XKKRCXXV 452
+P L+ + K S P R C V
Sbjct: 341 KAIHEPPLMKKSRKAHSSPQRITLSNPCKGV 371
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,952,366
Number of Sequences: 37544
Number of extensions: 376933
Number of successful extensions: 1198
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2811537600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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