Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_D24
(970 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK222465-1|BAD96185.1| 782|Homo sapiens excision repair cross-c... 126 2e-28
M31899-1|AAA52396.1| 782|Homo sapiens ERCC3 protein. 125 2e-28
BC008820-1|AAH08820.1| 782|Homo sapiens excision repair cross-c... 125 2e-28
AY163769-1|AAN46739.1| 782|Homo sapiens excision repair cross-c... 125 2e-28
AC110926-1|AAY15069.1| 782|Homo sapiens unknown protein. 125 2e-28
U50326-1|AAA98668.1| 527|Homo sapiens protein kinase C substrat... 36 0.29
J03075-1|AAA52493.1| 527|Homo sapiens G19P1 protein. 36 0.29
BT009858-1|AAP88860.1| 398|Homo sapiens protein kinase C substr... 34 0.90
BC013586-1|AAH13586.1| 398|Homo sapiens PRKCSH protein protein. 34 0.90
AF144075-1|AAF66686.1| 528|Homo sapiens glucosidase II beta sub... 34 0.90
U08377-1|AAA19604.1| 951|Homo sapiens protein ( Human homolog o... 32 3.6
BC024041-1|AAH24041.1| 547|Homo sapiens SFRS8 protein protein. 32 3.6
BC015953-1|AAH15953.1| 760|Homo sapiens SFRS8 protein protein. 32 3.6
BC008707-1|AAH08707.1| 760|Homo sapiens SFRS8 protein protein. 32 3.6
AB208921-1|BAD92158.1| 636|Homo sapiens SFRS8 protein variant p... 32 3.6
AL035406-9|CAI19891.1| 1954|Homo sapiens chromodomain helicase D... 31 8.4
AL031847-10|CAI19450.1| 1954|Homo sapiens chromodomain helicase ... 31 8.4
AK127046-1|BAC86802.1| 1225|Homo sapiens protein ( Homo sapiens ... 31 8.4
AF425231-1|AAL98962.1| 1954|Homo sapiens chromodomain helicase D... 31 8.4
>AK222465-1|BAD96185.1| 782|Homo sapiens excision repair
cross-complementing rodent repair deficiency,
complementation g protein.
Length = 782
Score = 126 bits (303), Expect = 2e-28
Identities = 64/128 (50%), Positives = 87/128 (67%), Gaps = 9/128 (7%)
Frame = +3
Query: 3 LVEYLQRLSKCAVPAGIVEFIKLCTLSYGKVKLVLKHNRYLVESKHVEVLQKLLKDPVIQ 182
+ EYL++LSK VP GI++FIKLCT+SYGKVKLVLKHNRY VES H +V+Q LL+DPVI+
Sbjct: 136 ITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESCHPDVIQHLLQDPVIR 195
Query: 183 QCRLRRDGDE--DLLSNDLPAK---PTTSLAKPGEE----KPPAANGAVPDDISQFYQQL 335
+CRLR E +L++ +K P T+ + G P +P D+ FY+Q+
Sbjct: 196 ECRLRNSEGEATELITETFTSKSAIPKTAESSGGPSTSRVTDPQGKSDIPMDLFDFYEQM 255
Query: 336 DKDDDEEE 359
DKD++EEE
Sbjct: 256 DKDEEEEE 263
>M31899-1|AAA52396.1| 782|Homo sapiens ERCC3 protein.
Length = 782
Score = 125 bits (302), Expect = 2e-28
Identities = 63/128 (49%), Positives = 84/128 (65%), Gaps = 9/128 (7%)
Frame = +3
Query: 3 LVEYLQRLSKCAVPAGIVEFIKLCTLSYGKVKLVLKHNRYLVESKHVEVLQKLLKDPVIQ 182
+ EYL++LSK VP GI++FIKLCT+SYGKVKLVLKHNRY VES H +V+Q LL+DPVI+
Sbjct: 136 ITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESCHPDVIQHLLQDPVIR 195
Query: 183 QCRLRRDGDE--DLLSNDLPAKPTTSLAKPGEEKP-------PAANGAVPDDISQFYQQL 335
+CRLR E +L++ +K S P P +P D+ FY+Q+
Sbjct: 196 ECRLRNSEGEATELITETFTSKSAISKTAESSGGPSTSRVTDPQGKSDIPMDLFDFYEQM 255
Query: 336 DKDDDEEE 359
DKD++EEE
Sbjct: 256 DKDEEEEE 263
>BC008820-1|AAH08820.1| 782|Homo sapiens excision repair
cross-complementing rodent repair deficiency,
complementation g protein.
Length = 782
Score = 125 bits (302), Expect = 2e-28
Identities = 63/128 (49%), Positives = 84/128 (65%), Gaps = 9/128 (7%)
Frame = +3
Query: 3 LVEYLQRLSKCAVPAGIVEFIKLCTLSYGKVKLVLKHNRYLVESKHVEVLQKLLKDPVIQ 182
+ EYL++LSK VP GI++FIKLCT+SYGKVKLVLKHNRY VES H +V+Q LL+DPVI+
Sbjct: 136 ITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESCHPDVIQHLLQDPVIR 195
Query: 183 QCRLRRDGDE--DLLSNDLPAKPTTSLAKPGEEKP-------PAANGAVPDDISQFYQQL 335
+CRLR E +L++ +K S P P +P D+ FY+Q+
Sbjct: 196 ECRLRNSEGEATELITETFTSKSAISKTAESSGGPSTSRVTDPQGKSDIPMDLFDFYEQM 255
Query: 336 DKDDDEEE 359
DKD++EEE
Sbjct: 256 DKDEEEEE 263
>AY163769-1|AAN46739.1| 782|Homo sapiens excision repair
cross-complementing rodent repair deficiency,
complementation g protein.
Length = 782
Score = 125 bits (302), Expect = 2e-28
Identities = 63/128 (49%), Positives = 84/128 (65%), Gaps = 9/128 (7%)
Frame = +3
Query: 3 LVEYLQRLSKCAVPAGIVEFIKLCTLSYGKVKLVLKHNRYLVESKHVEVLQKLLKDPVIQ 182
+ EYL++LSK VP GI++FIKLCT+SYGKVKLVLKHNRY VES H +V+Q LL+DPVI+
Sbjct: 136 ITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESCHPDVIQHLLQDPVIR 195
Query: 183 QCRLRRDGDE--DLLSNDLPAKPTTSLAKPGEEKP-------PAANGAVPDDISQFYQQL 335
+CRLR E +L++ +K S P P +P D+ FY+Q+
Sbjct: 196 ECRLRNSEGEATELITETFTSKSAISKTAESSGGPSTSRVTDPQGKSDIPMDLFDFYEQM 255
Query: 336 DKDDDEEE 359
DKD++EEE
Sbjct: 256 DKDEEEEE 263
>AC110926-1|AAY15069.1| 782|Homo sapiens unknown protein.
Length = 782
Score = 125 bits (302), Expect = 2e-28
Identities = 63/128 (49%), Positives = 84/128 (65%), Gaps = 9/128 (7%)
Frame = +3
Query: 3 LVEYLQRLSKCAVPAGIVEFIKLCTLSYGKVKLVLKHNRYLVESKHVEVLQKLLKDPVIQ 182
+ EYL++LSK VP GI++FIKLCT+SYGKVKLVLKHNRY VES H +V+Q LL+DPVI+
Sbjct: 136 ITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNRYFVESCHPDVIQHLLQDPVIR 195
Query: 183 QCRLRRDGDE--DLLSNDLPAKPTTSLAKPGEEKP-------PAANGAVPDDISQFYQQL 335
+CRLR E +L++ +K S P P +P D+ FY+Q+
Sbjct: 196 ECRLRNSEGEATELITETFTSKSAISKTAESSGGPSTSRVTDPQGKSDIPMDLFDFYEQM 255
Query: 336 DKDDDEEE 359
DKD++EEE
Sbjct: 256 DKDEEEEE 263
>U50326-1|AAA98668.1| 527|Homo sapiens protein kinase C substrate
80K-H protein.
Length = 527
Score = 35.5 bits (78), Expect = 0.29
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +3
Query: 213 DLLSNDLPAKPTTSLAKPGEEKPPAANGAVPDDISQFYQQLDKDDDEEETSGCYCQPXL 389
+ L DLPA L +P EE+PP + ++ + ++ + +++EEE P L
Sbjct: 283 EALPTDLPAPSAPDLTEPKEEQPPVPSSPTEEEEEEEEEEEEAEEEEEEEDSEEAPPPL 341
>J03075-1|AAA52493.1| 527|Homo sapiens G19P1 protein.
Length = 527
Score = 35.5 bits (78), Expect = 0.29
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +3
Query: 213 DLLSNDLPAKPTTSLAKPGEEKPPAANGAVPDDISQFYQQLDKDDDEEETSGCYCQPXL 389
+ L DLPA L +P EE+PP + ++ + ++ + +++EEE P L
Sbjct: 283 EALPTDLPAPSAPDLTEPKEEQPPVPSSPTEEEEEEEEEEEEAEEEEEEEDSEEAPPPL 341
>BT009858-1|AAP88860.1| 398|Homo sapiens protein kinase C substrate
80K-H protein.
Length = 398
Score = 33.9 bits (74), Expect = 0.90
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +3
Query: 213 DLLSNDLPAKPTTSLAKPGEEKPPAANGAVPDDISQFYQQLDKDDDEEETSGCYCQPXL 389
+ L DLP L +P EE+PP + ++ + ++ + +++EEE P L
Sbjct: 154 EALPTDLPTPSAPDLTEPKEEQPPVPSSPTEEEEEEEEEEEEAEEEEEEEDSEEAPPPL 212
>BC013586-1|AAH13586.1| 398|Homo sapiens PRKCSH protein protein.
Length = 398
Score = 33.9 bits (74), Expect = 0.90
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +3
Query: 213 DLLSNDLPAKPTTSLAKPGEEKPPAANGAVPDDISQFYQQLDKDDDEEETSGCYCQPXL 389
+ L DLP L +P EE+PP + ++ + ++ + +++EEE P L
Sbjct: 154 EALPTDLPTPSAPDLTEPKEEQPPVPSSPTEEEEEEEEEEEEAEEEEEEEDSEEAPPPL 212
>AF144075-1|AAF66686.1| 528|Homo sapiens glucosidase II beta
subunit protein.
Length = 528
Score = 33.9 bits (74), Expect = 0.90
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 213 DLLSNDLPAKPTTSLAKPGEEKPPAANGAVPDDISQFYQQLDKDDDEEE 359
+ L DLPA L +P EE+PP + ++ + ++ ++ ++EEE
Sbjct: 283 EALPTDLPAPSAPDLTEPKEEQPPVPSSPTEEEEEEEEEEEEEAEEEEE 331
>U08377-1|AAA19604.1| 951|Homo sapiens protein ( Human homolog of
Drosophila splicing regulator
suppressor-of-white-apricot mRNA, complete cds. ).
Length = 951
Score = 31.9 bits (69), Expect = 3.6
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = +3
Query: 336 DKDDDEEETSGCYCQPXLLALKVGSRPNRX*XKKRCXXVWXHPFAGLEYQXSGNXSHPXP 515
D +DD++E G Y P L A K +R + HP A L + + S P P
Sbjct: 284 DNEDDDDEEDGNYLHPSLFASKKCNRLEELMKPLKVVDP-DHPLAALVRKAQADSSTPTP 342
Query: 516 GNXTFGXLKP 545
N ++P
Sbjct: 343 HNADGAPVQP 352
>BC024041-1|AAH24041.1| 547|Homo sapiens SFRS8 protein protein.
Length = 547
Score = 31.9 bits (69), Expect = 3.6
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = +3
Query: 336 DKDDDEEETSGCYCQPXLLALKVGSRPNRX*XKKRCXXVWXHPFAGLEYQXSGNXSHPXP 515
D +DD++E G Y P L A K +R + HP A L + + S P P
Sbjct: 221 DNEDDDDEEDGNYLHPSLFASKKCNRLEELMKPLKVVDP-DHPLAALVRKAQADSSTPTP 279
Query: 516 GNXTFGXLKP 545
N ++P
Sbjct: 280 HNADGAPVQP 289
>BC015953-1|AAH15953.1| 760|Homo sapiens SFRS8 protein protein.
Length = 760
Score = 31.9 bits (69), Expect = 3.6
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = +3
Query: 336 DKDDDEEETSGCYCQPXLLALKVGSRPNRX*XKKRCXXVWXHPFAGLEYQXSGNXSHPXP 515
D +DD++E G Y P L A K +R + HP A L + + S P P
Sbjct: 284 DNEDDDDEEDGNYLHPSLFASKKCNRLEELMKPLKVVDP-DHPLAALVRKAQADSSTPTP 342
Query: 516 GNXTFGXLKP 545
N ++P
Sbjct: 343 HNADGAPVQP 352
>BC008707-1|AAH08707.1| 760|Homo sapiens SFRS8 protein protein.
Length = 760
Score = 31.9 bits (69), Expect = 3.6
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = +3
Query: 336 DKDDDEEETSGCYCQPXLLALKVGSRPNRX*XKKRCXXVWXHPFAGLEYQXSGNXSHPXP 515
D +DD++E G Y P L A K +R + HP A L + + S P P
Sbjct: 284 DNEDDDDEEDGNYLHPSLFASKKCNRLEELMKPLKVVDP-DHPLAALVRKAQADSSTPTP 342
Query: 516 GNXTFGXLKP 545
N ++P
Sbjct: 343 HNADGAPVQP 352
>AB208921-1|BAD92158.1| 636|Homo sapiens SFRS8 protein variant
protein.
Length = 636
Score = 31.9 bits (69), Expect = 3.6
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = +3
Query: 336 DKDDDEEETSGCYCQPXLLALKVGSRPNRX*XKKRCXXVWXHPFAGLEYQXSGNXSHPXP 515
D +DD++E G Y P L A K +R + HP A L + + S P P
Sbjct: 168 DNEDDDDEEDGNYLHPSLFASKKCNRLEELMKPLKVVDP-DHPLAALVRKAQADSSTPTP 226
Query: 516 GNXTFGXLKP 545
N ++P
Sbjct: 227 HNADGAPVQP 236
>AL035406-9|CAI19891.1| 1954|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1954
Score = 30.7 bits (66), Expect = 8.4
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +3
Query: 186 CRLRRDGDEDLLSNDLPAKPTTSLAKPGEEKPPAANGAVPDDISQFYQQLDKDDD-EEET 362
C + + G E +L + P P EK P + P + Q KDDD EEE
Sbjct: 346 CEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKDDDDEEEE 405
Query: 363 SGC 371
GC
Sbjct: 406 GGC 408
>AL031847-10|CAI19450.1| 1954|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1954
Score = 30.7 bits (66), Expect = 8.4
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +3
Query: 186 CRLRRDGDEDLLSNDLPAKPTTSLAKPGEEKPPAANGAVPDDISQFYQQLDKDDD-EEET 362
C + + G E +L + P P EK P + P + Q KDDD EEE
Sbjct: 346 CEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKDDDDEEEE 405
Query: 363 SGC 371
GC
Sbjct: 406 GGC 408
>AK127046-1|BAC86802.1| 1225|Homo sapiens protein ( Homo sapiens
cDNA FLJ45103 fis, clone BRAWH3032571, moderately
similar to Chromodomain helicase-DNA-binding protein 4.
).
Length = 1225
Score = 30.7 bits (66), Expect = 8.4
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +3
Query: 186 CRLRRDGDEDLLSNDLPAKPTTSLAKPGEEKPPAANGAVPDDISQFYQQLDKDDD-EEET 362
C + + G E +L + P P EK P + P + Q KDDD EEE
Sbjct: 346 CEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKDDDDEEEE 405
Query: 363 SGC 371
GC
Sbjct: 406 GGC 408
>AF425231-1|AAL98962.1| 1954|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1954
Score = 30.7 bits (66), Expect = 8.4
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +3
Query: 186 CRLRRDGDEDLLSNDLPAKPTTSLAKPGEEKPPAANGAVPDDISQFYQQLDKDDD-EEET 362
C + + G E +L + P P EK P + P + Q KDDD EEE
Sbjct: 346 CEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKDDDDEEEE 405
Query: 363 SGC 371
GC
Sbjct: 406 GGC 408
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,917,769
Number of Sequences: 237096
Number of extensions: 2345854
Number of successful extensions: 5476
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5454
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12880737904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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