Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_D23
(911 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 244 1e-65
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 244 1e-65
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 122 5e-29
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 84 3e-17
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 32 0.13
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 1.6
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 2.8
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 27 2.8
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 8.5
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 244 bits (597), Expect = 1e-65
Identities = 109/140 (77%), Positives = 122/140 (87%)
Frame = +1
Query: 448 HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ 627
+SDC FMVDNEA YDICRRNLDIERPTY NLNRLI Q+VSSITASLRF G+LNVDL EFQ
Sbjct: 201 NSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQ 260
Query: 628 TNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC 807
TNLVPYPRIHFPLVTY+P++SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C
Sbjct: 261 TNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATC 320
Query: 808 MLYRGDVVPKDVNAXIATSK 867
+LYRGDV+P+DV A + + K
Sbjct: 321 LLYRGDVIPRDVQAAVTSIK 340
Score = 194 bits (474), Expect = 1e-50
Identities = 81/126 (64%), Positives = 107/126 (84%)
Frame = +3
Query: 45 PXAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 224
P +++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++D VL+RI
Sbjct: 67 PRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERI 126
Query: 225 RKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 404
R++AD C+GLQGFL+FH LL+ERL+++YGKKS L+F++YPAPQVST+VV
Sbjct: 127 RRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVV 186
Query: 405 EPYNSI 422
EPYNS+
Sbjct: 187 EPYNSV 192
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 244 bits (597), Expect = 1e-65
Identities = 108/139 (77%), Positives = 122/139 (87%)
Frame = +1
Query: 451 SDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQT 630
+DC FMVDNE+ YDICRRNLDIERP+Y NLNRLI Q+VSSITASLRF+G+LNVDL EFQT
Sbjct: 198 ADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQT 257
Query: 631 NLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCM 810
NLVPYPRIHFPLVTYAP++SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+
Sbjct: 258 NLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCL 317
Query: 811 LYRGDVVPKDVNAXIATSK 867
LYRGDV+P+DV A + T K
Sbjct: 318 LYRGDVIPRDVQAAVTTIK 336
Score = 194 bits (474), Expect = 1e-50
Identities = 84/126 (66%), Positives = 106/126 (84%)
Frame = +3
Query: 45 PXAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 224
P +++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V D+I
Sbjct: 63 PRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKI 122
Query: 225 RKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 404
R++AD C+GLQGFL+FH LL+ERL+++Y KKSKL+F++YPAPQVST+VV
Sbjct: 123 RRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVV 182
Query: 405 EPYNSI 422
EPYNS+
Sbjct: 183 EPYNSV 188
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 122 bits (295), Expect = 5e-29
Identities = 55/137 (40%), Positives = 85/137 (62%)
Frame = +1
Query: 445 KHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEF 624
++SD F +DNEA+ I L I+ P+Y +LN L+ +++ +T S RF G LN DL +
Sbjct: 194 ENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKL 253
Query: 625 QTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMAC 804
N+VP+PR+HF +V +AP+ + + + +SV E+T F+ N MV DPRHG+Y+
Sbjct: 254 AVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTV 313
Query: 805 CMLYRGDVVPKDVNAXI 855
L+RG V K+V+ I
Sbjct: 314 AALFRGKVSMKEVDEQI 330
Score = 110 bits (264), Expect = 3e-25
Identities = 51/125 (40%), Positives = 74/125 (59%)
Frame = +3
Query: 45 PXAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 224
P AV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D VLD +
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120
Query: 225 RKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 404
R+ A+ C LQGF + H LL+ ++ +Y + F++ PAP+ S VV
Sbjct: 121 RREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVV 180
Query: 405 EPYNS 419
EPYN+
Sbjct: 181 EPYNA 185
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 83.8 bits (198), Expect = 3e-17
Identities = 46/129 (35%), Positives = 72/129 (55%), Gaps = 3/129 (2%)
Frame = +3
Query: 45 PXAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKED--AANNYARGHYTIGKEIVDLVLD 218
P A+ +DLEP VV+ + + TY L++PE ++ K A NN+A G Y+ + I + ++D
Sbjct: 62 PRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMD 120
Query: 219 RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQ-VST 395
I + AD L+GF + H L+ERL+ Y KK ++++P Q VS
Sbjct: 121 MIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSD 180
Query: 396 AVVEPYNSI 422
VV+PYNS+
Sbjct: 181 VVVQPYNSL 189
Score = 73.7 bits (173), Expect = 3e-14
Identities = 39/137 (28%), Positives = 71/137 (51%), Gaps = 4/137 (2%)
Frame = +1
Query: 448 HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ 627
++D ++DN A+ I L + PT+ N+L+ ++S+ T +LR+ G +N DL
Sbjct: 198 NADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSII 257
Query: 628 TNLVPYPRIHFPLVTYAPVIS---AEKAYHEQLSVAEITNACFEPANQMVKCDP-RHGKY 795
+L+P PR HF L +Y P + E + +V ++ P NQMV +P + +
Sbjct: 258 ASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCF 317
Query: 796 MACCMLYRGDVVPKDVN 846
++ + +G+ P DV+
Sbjct: 318 ISILDIIQGEADPADVH 334
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 31.9 bits (69), Expect = 0.13
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = -3
Query: 642 RHQVSLELGEVHIQSAVESQRSSDRGDNLSNETIQVGVGWALNVEITAADVIDG 481
R + E + H ++ + Q+SSD ++ ++ T VG+G AL I + D +DG
Sbjct: 165 RRVLQAERAKEHRSNSNDKQKSSDNDEDPNDTT--VGIGAALAASILSVDSVDG 216
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.3 bits (60), Expect = 1.6
Identities = 19/74 (25%), Positives = 33/74 (44%)
Frame = -3
Query: 861 CSDXRVHILGYDVTTVQHTASHVLAMTGIAFHHLVGGLEACVCDLGNGKLFMVGLLGRDD 682
CS +LGY ++ A++V+A + + HL+ G D K G D
Sbjct: 406 CSAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK-------GLDM 458
Query: 681 WRVRDQWEVDTGVR 640
R Q+E++ G++
Sbjct: 459 LVDRVQYELEAGLQ 472
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = +1
Query: 730 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAXI 855
+ ACFEP N C H K C L + KD N +
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = -3
Query: 636 QVSLELGEVHIQSAVESQRSSDRGDNLSNETIQVGVGWALNVEITAADVIDGFIVDHEST 457
Q ++ VH ++A E R N + QVG +N ++ D+ + F+ D+E
Sbjct: 601 QSQIKSQSVHHENAAEEIRKMRNLRNSRINSQQVGEKVFVNPDVKTMDIQETFLQDYEDE 660
Query: 456 VRVLQGL 436
+GL
Sbjct: 661 TFANEGL 667
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 680 QSSLPRRPTMNSFPLPRSQTHASSPPTK 763
+ SLPRRP+ P S T ++ PP K
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,653,996
Number of Sequences: 5004
Number of extensions: 76216
Number of successful extensions: 229
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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