Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_D23
         (911 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +2

Query: 419 YPHHPHNP*STLTVLSWSTMKPSMTSAAVISTLSAQ 526
           +PH P  P +T+T ++ +T   + T+    +  + Q
Sbjct: 647 HPHEPGAPATTITTITTTTTTTTTTTTTTTTPNTTQ 682



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +2

Query: 428 HPHNP*STLTVLSWSTMKPSMTSAAVISTLSAQPT 532
           HPH P +  T ++  T   + T+    +T +   T
Sbjct: 647 HPHEPGAPATTITTITTTTTTTTTTTTTTTTPNTT 681


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 808 MLYRGDVVPKDVNAXIAT 861
           M+Y G  V  D+NA IAT
Sbjct: 319 MMYLGTPVMPDLNALIAT 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,971
Number of Sequences: 438
Number of extensions: 5435
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)