Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_D15
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    31   0.22 
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    31   0.29 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.67 
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   4.7  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 19/54 (35%), Positives = 20/54 (37%)
 Frame = +1

Query: 595  DLVPVAXPKPREPXAXGXXPPPVAXXXXXXFPGXPPPGXTXLGGXGPXFPXGXP 756
            DL   A P P  P A     PP A       P  PP G T + G  P  P   P
Sbjct: 1875 DLSNQAAPPPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISG-NPGMPAPVP 1927


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 205 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 306
           +R H+   GR+  ELDR+ T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 22/90 (24%), Positives = 24/90 (26%), Gaps = 1/90 (1%)
 Frame = +1

Query: 616 PKPREPXAXGXXPPPVAXXXXXX-FPGXPPPGXTXLGGXGPXFPXGXPPXFXPLPGGXXC 792
           P P  P       PP+         P  PPP  +   G  P  P G      P P     
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPS 371

Query: 793 RPXPXXPXXXXRXXRXPPLXXXXXPGVLXP 882
                 P    R    PP      PG   P
Sbjct: 372 TGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = +1

Query: 616 PKPREPXAXGXXPPPVAXXXXXXFPGXPPPGXTXLGGXGPXFP 744
           P PR   + G  PPP++       P  PPP     G   P  P
Sbjct: 364 PPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP--GRSAPALP 404


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 283 FPCVPTQSFVDPIHLKICQYPHGGL 209
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,164,361
Number of Sequences: 5004
Number of extensions: 63543
Number of successful extensions: 160
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)