Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_D12
(908 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 225 9e-60
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 221 1e-58
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 42 1e-04
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 29 1.2
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 28 1.6
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 27 3.7
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 6.4
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 225 bits (549), Expect = 9e-60
Identities = 104/155 (67%), Positives = 125/155 (80%)
Frame = +2
Query: 101 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 280
++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL +TWEKLVLAAR + IENP
Sbjct: 15 DDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIATIENP 74
Query: 281 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 460
ADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV DP D
Sbjct: 75 ADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADA 134
Query: 461 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 565
Q I EAS+VNIPVIALC+TDS L VD+AIP N K
Sbjct: 135 QAIKEASFVNIPVIALCDTDSILNHVDVAIPINNK 169
Score = 41.5 bits (93), Expect = 2e-04
Identities = 18/27 (66%), Positives = 21/27 (77%)
Frame = +3
Query: 576 SIGLMWWLLAREVLRLRGVLPRDQRWD 656
SIGL W+LLAREVLRLRG + R W+
Sbjct: 173 SIGLAWYLLAREVLRLRGNISRTTAWE 199
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 643 TSAGMLWFDLFSYRDPEEXEKXXQQ 717
T+A + DL+ YRDPEE E+ +Q
Sbjct: 195 TTAWEVMPDLYFYRDPEEIEREEEQ 219
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 221 bits (539), Expect = 1e-58
Identities = 110/188 (58%), Positives = 137/188 (72%), Gaps = 8/188 (4%)
Frame = +2
Query: 101 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 280
+ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL +TWEKLVLAAR + IENP
Sbjct: 14 DEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAARVIATIENP 73
Query: 281 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 460
ADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL++V DP D
Sbjct: 74 ADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADA 133
Query: 461 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNT---KVFPLYWF----DVV-VVGT*SV 616
Q I EAS+VNIPVIALC+TDS L VDIAIP N K L W+ +V+ V GT S
Sbjct: 134 QAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSR 193
Query: 617 EASWCASP 640
A W P
Sbjct: 194 SAPWDVMP 201
Score = 44.8 bits (101), Expect = 2e-05
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +3
Query: 576 SIGLMWWLLAREVLRLRGVLPRDQRWD 656
SIGL+W+LLAREVLR+RG L R WD
Sbjct: 172 SIGLIWYLLAREVLRVRGTLSRSAPWD 198
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 667 DLFSYRDPEEXEKXXQQAK 723
DL+ YRDPEE E+ + K
Sbjct: 202 DLYFYRDPEEVEREEEAKK 220
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 41.9 bits (94), Expect = 1e-04
Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 27/174 (15%)
Frame = +2
Query: 119 MLAATTHLGAENV--NFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVF 292
+L++ HLG N + ++Y +R +G H+I+L +T L A V +I +
Sbjct: 53 LLSSGAHLGHSTSIWNPYTQPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGII 111
Query: 293 VISSRPFGQR-AVLKFAAHTGATPIAGRFTPGAFTN--QIQA------------------ 409
+ GQ+ +V+ A I R+ PG TN ++Q
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQT 171
Query: 410 ----AFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 559
++ P L+++L+P ++ EA ++P I + +TD+ R V IP N
Sbjct: 172 DKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPAN 225
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +2
Query: 209 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 385
V+++R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -2
Query: 685 HGRRTNQTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLG 560
H S RW G+T S A++ I PIEWE +G
Sbjct: 433 HSSLAYSNNISVRWFLGAT--SAQNRNASSEAILPIEWEAVG 472
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 3.7
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -2
Query: 472 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DD 293
S GL L R + E F + +S + W T + + G+RG ++ EGP D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225
Query: 292 EHISGVLDG 266
H SGV G
Sbjct: 226 LH-SGVFGG 233
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 579 IGLMWWLLAREVLRLRGVLPRDQRWD 656
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,876,925
Number of Sequences: 5004
Number of extensions: 83488
Number of successful extensions: 197
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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