Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_D10
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    27   2.6  
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    27   3.5  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   4.6  

>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 302 PVSATGSLIVAIGFALKKAVGK-GWVRGYNTLAHKNGLRDANRKRPTD 162
           P  +TG LI+     ++   G  GW+ G +++   N    A+  +P+D
Sbjct: 484 PGGSTGILIINDLLVIRSFAGSLGWLPGQSSVRTSNNAMSASASKPSD 531


>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 442 GIPPPWLLAVLQHRGGYKSYP 504
           G PPPWL A +Q  G   SYP
Sbjct: 349 GAPPPWLFA-MQRYGPPPSYP 368


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 296 SQASDFLTFPKTTVFFKTRPPLAILPAVALYSPSGFLS 409
           S A +F  F  +++FF ++PPL   P   + S    LS
Sbjct: 196 SLAHEFHNFLPSSIFFGSKPPLGSFPLRGIQSSQFTLS 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,322,434
Number of Sequences: 5004
Number of extensions: 69067
Number of successful extensions: 192
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)