Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_D03
(867 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 36 0.006
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 32 0.12
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 32 0.12
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 31 0.28
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.65
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 28 1.5
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 28 1.5
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 28 2.0
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 2.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.6
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace... 27 3.5
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 27 4.6
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 36.3 bits (80), Expect = 0.006
Identities = 17/58 (29%), Positives = 21/58 (36%)
Frame = +3
Query: 660 PXPRWNPPXXRPXCXSGXXPRXTALXGPXPXPPGXPXXLSPXXXLXPAPXPPLPPXXP 833
P P PP +P + P+ + P P P G P P P P P P P
Sbjct: 1086 PAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP 1143
Score = 30.3 bits (65), Expect = 0.37
Identities = 15/53 (28%), Positives = 18/53 (33%)
Frame = +3
Query: 678 PPXXRPXCXSGXXPRXTALXGPXPXPPGXPXXLSPXXXLXPAPXPPLPPXXPS 836
PP P P+ A P P P P P + P P P P P+
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPT 1221
Score = 29.9 bits (64), Expect = 0.49
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Frame = +3
Query: 660 PXPRWNPPXXRPXCXSGXXPRXTALXGPXPXPPGXPXXLSPXXXLXPAPXPP--LPPXXP 833
P P PP +P + P ++ P P P + P P P P +PP P
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/52 (28%), Positives = 18/52 (34%)
Frame = +3
Query: 678 PPXXRPXCXSGXXPRXTALXGPXPXPPGXPXXLSPXXXLXPAPXPPLPPXXP 833
PP P + P+ + P P P G P P P P P P P
Sbjct: 1112 PPVPAPS-GAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVP 1162
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/51 (27%), Positives = 18/51 (35%)
Frame = +3
Query: 660 PXPRWNPPXXRPXCXSGXXPRXTALXGPXPXPPGXPXXLSPXXXLXPAPXP 812
P P P P + P+ + P P P P +P L P P P
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232
Score = 26.6 bits (56), Expect = 4.6
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Frame = +3
Query: 660 PXPRWNPPXXRPXCXSGXXPRXTALXGPXPXPP-GXPXXLSPXXXLXPAPXPP--LPPXX 830
P P PP +P + P + P P P P +P + P P P +PP
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVPAPSGAP-PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVP 1192
Query: 831 P 833
P
Sbjct: 1193 P 1193
Score = 26.2 bits (55), Expect = 6.0
Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Frame = +3
Query: 660 PXPRWNPPXXRPXCXSGXXPRXTALXGPXPXPPGXPXXLSPXXXLXPAPXPP--LPP 824
P P P + P+ + P P P G P P P P P +PP
Sbjct: 1124 PKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180
Score = 25.8 bits (54), Expect = 8.0
Identities = 16/59 (27%), Positives = 18/59 (30%)
Frame = +3
Query: 660 PXPRWNPPXXRPXCXSGXXPRXTALXGPXPXPPGXPXXLSPXXXLXPAPXPPLPPXXPS 836
P P PP P P TA P P P +S P+P P S
Sbjct: 1211 PPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSPTS 1269
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.9 bits (69), Expect = 0.12
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = +3
Query: 651 TAGPXPRWNPPXXR--PXCXSGXXPRXTALXGPXPXPPGXPXXLSPXXXLXPAPXPPLPP 824
+A P P PP P S P ++L P P P P P P+ PP+PP
Sbjct: 142 SAPPRPSIPPPSPASAPPIPSKAPPIPSSL--PPPAQPAAPVKSPPSAPSLPSAVPPMPP 199
Query: 825 XXP 833
P
Sbjct: 200 KVP 202
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 31.9 bits (69), Expect = 0.12
Identities = 19/62 (30%), Positives = 21/62 (33%)
Frame = -3
Query: 865 GXXXGXKXXXXGXXGGRGGXGAGXKXXXGXXXXGXPGGXGXGPXSAVXRGXXPEXHXGRX 686
G G + G GGRGG G G G G GG G + RG G
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAK 68
Query: 685 XG 680
G
Sbjct: 69 GG 70
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 30.7 bits (66), Expect = 0.28
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 241 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 342
+R H+ GR+ ELDR+ T+L++R L Q + G
Sbjct: 18 LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.5 bits (63), Expect = 0.65
Identities = 17/45 (37%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Frame = -3
Query: 865 GXXXGXKXXXXGXXGGRGGXGAGXKXXXGXXXX--GXPGGXGXGP 737
G G G GG GG G G G G PGG G GP
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGP 265
Score = 25.8 bits (54), Expect = 8.0
Identities = 23/70 (32%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Frame = -3
Query: 865 GXXXGXKXXXXGXXGGRGGXGAGXKXXXGXXXXGX-PGGXGXGPXSAVXRGXXPEXHXGR 689
G G G GG GG G G G PGG GP G P G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGF---GGGPGGFGG- 249
Query: 688 XXGGFHLGXG 659
GGF G G
Sbjct: 250 GLGGFGGGPG 259
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +2
Query: 545 RMHNSDEMDFVI--XQKNXQXVRXRTVGC 625
++ NSDEMD ++ +KN Q R T+GC
Sbjct: 1058 QIRNSDEMDRILRRKRKNLQRKRSGTIGC 1086
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Frame = +3
Query: 678 PPXXRPXCXSGXXPRXTALXGPXPXPPGXPXXLSPXXXLXP-APXPPLP--PXXPSFXFX 848
PP +P S P P PG L P P P PP+P P P+
Sbjct: 461 PPWQQPTQQSAVQPSNLVPSQNAPFIPGTSAPLPPTTFAPPGVPLPPIPGAPGMPNLNMS 520
Query: 849 CPXSXP 866
P P
Sbjct: 521 QPPMVP 526
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 419 RARVSNNGSVSXIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHN 556
RA +++ + +KR DI + DNW ND+ C + G +H+
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIHS 630
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = -3
Query: 832 GXXGGRGGXGAGXKXXXGXXXXGXPGGXGXGPXS 731
G GGRGG G G G G P P S
Sbjct: 460 GGFGGRGGFGGGRGRGRGGARSGNPNRGSVAPFS 493
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/31 (35%), Positives = 12/31 (38%)
Frame = +3
Query: 741 PXPXPPGXPXXLSPXXXLXPAPXPPLPPXXP 833
P PP P P + PPLPP P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP 454
Score = 26.6 bits (56), Expect = 4.6
Identities = 17/60 (28%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Frame = +3
Query: 660 PXPRWNPPXXRPXCXSGXXPRXT-ALXGPXPXPPGXPXXLSPXXXLXPAPXPPLPPXXPS 836
P P PP P P P PP P ++P PPLPP P+
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP--IAPPLPAGMPAAPPLPPAAPA 475
>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
N-acetylglucosaminyltransferase Alg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 165 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 67
Y ES + D+ + SH+ A +I Q R+G +
Sbjct: 63 YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 319 FPCVPTQSFVDPIHLKICQYPHGGL 245
F +P Q+F H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,947,890
Number of Sequences: 5004
Number of extensions: 56705
Number of successful extensions: 198
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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