Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_C14
(858 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 43 3e-06
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 43 3e-06
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 43 4e-06
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 42 5e-06
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 42 7e-06
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 41 1e-05
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 41 2e-05
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 41 2e-05
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 41 2e-05
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 41 2e-05
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 40 3e-05
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 40 3e-05
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 40 3e-05
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 40 3e-05
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 40 4e-05
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 38 9e-05
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 38 1e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 37 3e-04
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 37 3e-04
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 36 4e-04
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 36 5e-04
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 30 0.031
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 29 0.041
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 29 0.041
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 29 0.041
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 29 0.055
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 29 0.072
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 43.2 bits (97), Expect = 3e-06
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Frame = +1
Query: 220 NIRESXSTVRILADLXMNWIDXRLXWNAGEWGCXTWL-VSSERLXRPDXVLLNAA-ATTA 393
++ E + A L + W+D L WN E+G L ++ +L +PD ++ N+A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 394 GDYXLRARVSNNGSVSCIKRLDINTPIAMXLXNWPNDMQTCTFXXGS 534
G Y V++NGS + + + + +P D Q C GS
Sbjct: 153 GTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGS 199
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 43.2 bits (97), Expect = 3e-06
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Frame = +1
Query: 220 NIRESXSTVRILADLXMNWIDXRLXWNAGEWGCXTWL-VSSERLXRPDXVLLNAA-ATTA 393
++ E + A L + W+D L WN E+G L ++ +L +PD ++ N+A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 394 GDYXLRARVSNNGSVSCIKRLDINTPIAMXLXNWPNDMQTCTFXXGS 534
G Y V++NGS + + + + +P D Q C GS
Sbjct: 153 GTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGS 199
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 42.7 bits (96), Expect = 4e-06
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Frame = +1
Query: 220 NIRESXSTVRILADLXMNWIDXRLXWNAGEWGCXTWL-VSSERLXRPDXVLLNAA-ATTA 393
++ E + A L + W+D L WN E+G L ++ +L +PD ++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 394 GDYXLRARVSNNGSVSCIKRLDINTPIAMXLXNWPNDMQTCTFXXGS 534
G Y V++NGS + + + + +P D Q C GS
Sbjct: 85 GTYQTSVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGS 131
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 42.3 bits (95), Expect = 5e-06
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Frame = +1
Query: 220 NIRESXSTVRILADLXMNWIDXRLXWNAGEWGCXTWL-VSSERLXRPDXVLLNAA-ATTA 393
++ E + A L + W+D L WN E+G L ++ +L +PD ++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 394 GDYXLRARVSNNGSVSCIKRLDINTPIAMXLXNWPNDMQTCTFXXGS 534
G Y V+++GS + + M + +P D Q C GS
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPFDDQHCDMKFGS 131
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 41.9 bits (94), Expect = 7e-06
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Frame = +1
Query: 220 NIRESXSTVRILADLXMNWIDXRLXWNAGEWGCXTWL-VSSERLXRPDXVLLNAA-ATTA 393
++ E + A L + W+D L WN E+G L ++ +L +PD ++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 394 GDYXLRARVSNNGSVSCIKRLDINTPIAMXLXNWPNDMQTCTFXXGS 534
G Y V+++GS + + M + +P D Q C GS
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFPFDDQHCDMKFGS 131
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 41.1 bits (92), Expect = 1e-05
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Frame = +1
Query: 181 KIVVNLTL-HLRHANIRESXSTVRILADLXMNWIDXRLXWNAGEWGCXTWL-VSSERLXR 354
++ + L L L N++ T + + +W D +L W E+G L V S+ + R
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLWVE--QSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 355 PDXVLLNAAATTAGDYXL----RARVSNNGSVSCIKRLDINTPIAMXLXNWPNDMQTCTF 522
PD VL N A G+Y + +A V +G V + ++ + +P D+QTC
Sbjct: 113 PDIVLYNNA---DGNYEVTLMTKATVYYSGLVVWQPPAVYKSSCSIDVEFFPYDVQTCVL 169
Query: 523 XXGS 534
GS
Sbjct: 170 KLGS 173
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 40.7 bits (91), Expect = 2e-05
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Frame = +1
Query: 220 NIRESXSTVRILADLXMNWIDXRLXWNAGEWGCXTWL-VSSERLXRPDXVLLNAA-ATTA 393
++ E + A L + W+D L WN E+G L ++ +L +PD ++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 394 GDYXLRARVSNNGSVSCIKRLDINTPIAMXLXNWPNDMQTCTFXXGS 534
G Y V+++GS + + + + +P D Q C GS
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKIDIAWFPFDDQHCDMKFGS 131
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 40.7 bits (91), Expect = 2e-05
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Frame = +1
Query: 220 NIRESXSTVRILADLXMNWIDXRLXWNAGEWGCXTWL-VSSERLXRPDXVLLNAA-ATTA 393
++ E + A L + W+D L WN E+G L ++ +L +PD ++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 394 GDYXLRARVSNNGSVSCIKRLDINTPIAMXLXNWPNDMQTCTFXXGS 534
G Y V+++GS + + + + +P D Q C GS
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGS 131
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 40.7 bits (91), Expect = 2e-05
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Frame = +1
Query: 220 NIRESXSTVRILADLXMNWIDXRLXWNAGEWGCXTWL-VSSERLXRPDXVLLNAA-ATTA 393
++ E + A L + W+D L WN E+G L ++ +L +PD ++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 394 GDYXLRARVSNNGSVSCIKRLDINTPIAMXLXNWPNDMQTCTFXXGS 534
G Y V+++GS + + + + +P D Q C GS
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFPFDDQHCDMKFGS 131
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 40.7 bits (91), Expect = 2e-05
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Frame = +1
Query: 181 KIVVNLTL-HLRHANIRESXSTVRILADLXMNWIDXRLXWNAGEWGCXTWL-VSSERLXR 354
K+ VN L ++ N+ E ++ L W D +L W+ ++G L + +++ +
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 355 PDXVLLNAAATTAGDYXLRAR----VSNNGSVSCIKRLDINTPIAMXLXNWPNDMQTCTF 522
PD VL N A G+Y +R + + NG V + + + + +P D QTC
Sbjct: 111 PDIVLFNNA---DGNYEVRYKSNVLIYPNGDVLWVPPAIYQSSCTIDVTYFPFDQQTCIM 167
Query: 523 XXGS 534
GS
Sbjct: 168 KFGS 171
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 39.9 bits (89), Expect = 3e-05
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 6/124 (4%)
Frame = +1
Query: 181 KIVVNLTLHL--RHANIRESXSTVRILADLXMNWIDXRLXWNAGEWGCXTWL-VSSERLX 351
+I N+T+ L + + S + + + + + W D L W ++ ++ V S+ +
Sbjct: 66 QIANNVTMQLLPKLMEFDDWTSVMELHSWMTLMWTDSHLSWKPSDFDGINYIYVKSDDIW 125
Query: 352 RPDXVLLNAAATT---AGDYXLRARVSNNGSVSCIKRLDINTPIAMXLXNWPNDMQTCTF 522
PD + N+ T G V ++GSVSC+ + A +WP D C
Sbjct: 126 VPDISVYNSGDMTFDQTGIPPTTCLVFSSGSVSCVPSVKHVAKCATDFSSWPYDTHRCRI 185
Query: 523 XXGS 534
GS
Sbjct: 186 NFGS 189
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 39.9 bits (89), Expect = 3e-05
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 3/121 (2%)
Frame = +1
Query: 181 KIVVNLTL-HLRHANIRESXSTVRILADLXMNWIDXRLXWNAGEWGCXTWL-VSSERLXR 354
++ + L L L N++ T + + +W D +L W E+G L V S+ + R
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLWVE--QSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 355 PDXVLL-NAAATTAGDYXLRARVSNNGSVSCIKRLDINTPIAMXLXNWPNDMQTCTFXXG 531
PD VL NA +A + + G V + + + +P D QTC G
Sbjct: 113 PDIVLYNNADGNFEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFG 172
Query: 532 S 534
S
Sbjct: 173 S 173
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 39.9 bits (89), Expect = 3e-05
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Frame = +1
Query: 184 IVVNLTLHLRHA---NIRESXSTVRILADLXMNWIDXRLXWNAGEWGCXTWL-VSSERLX 351
+VV L L L N+++ T + L W D + W+ E+G T L V SE +
Sbjct: 46 VVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIW 103
Query: 352 RPDXVLLNAAATTAGDYXL-RARVSNNGSVSCIKRLDINTPIAMXLXNWPNDMQTCTFXX 528
PD VL N A G + +A + G V + + + +P D QTC
Sbjct: 104 LPDIVLYNNADGEYGVTTMTKAILHYTGKVLWTPPAIFKSSCEIDVRYFPFDQQTCFMKF 163
Query: 529 GS 534
GS
Sbjct: 164 GS 165
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 39.9 bits (89), Expect = 3e-05
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Frame = +1
Query: 262 LXMNWIDXRLXWNAGEWGCXTWL-VSSERLXRPDXVLLNAA-ATTAGDYXLRARVSNNGS 435
L + W D + WN ++G L + RL +PD ++ N+A G Y V NNG+
Sbjct: 76 LKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGT 135
Query: 436 VSCIKRLDINTPIAMXLXNWPNDMQTCTFXXGS 534
+ + + + +P D Q C GS
Sbjct: 136 CLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGS 168
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 39.5 bits (88), Expect = 4e-05
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 2/120 (1%)
Frame = +1
Query: 181 KIVVNLTLHLRHANIRESXSTVRILADLXMNWIDXRLXWNAGEWGCXTWL-VSSERLXRP 357
KI + L+ L N++ T + + +W D +L W+ E+G L V S+ + RP
Sbjct: 53 KIKLKLS-QLIDVNLKNQIMTTNLWVE--QSWYDYKLKWDPKEYGGVEMLHVPSDHIWRP 109
Query: 358 DXVLL-NAAATTAGDYXLRARVSNNGSVSCIKRLDINTPIAMXLXNWPNDMQTCTFXXGS 534
D VL NA +A ++ G V + + + +P D QTC GS
Sbjct: 110 DIVLYNNADGNFEVTLATKATLNYTGRVEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGS 169
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 38.3 bits (85), Expect = 9e-05
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 5/110 (4%)
Frame = +1
Query: 220 NIRESXSTVRILADLXMNWIDXRLXWNAGEWGCXTWL-VSSERLXRPDXVLLNAAATTAG 396
N++ T + + W D +L WN E+G L V SE + PD VL N A G
Sbjct: 74 NLKNQVMTTNVWVE--QRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYNNA---DG 128
Query: 397 DYXL----RARVSNNGSVSCIKRLDINTPIAMXLXNWPNDMQTCTFXXGS 534
+Y + +A + G VS + + + +P D Q+C GS
Sbjct: 129 NYEVTLMTKATLKYTGDVSWKPPAIYKSSCEINVEYFPFDEQSCIMKFGS 178
Score = 23.0 bits (47), Expect = 3.6
Identities = 9/34 (26%), Positives = 16/34 (47%)
Frame = -1
Query: 588 LYILMSXTKSMWSLLCIARTXXERASLHVVGPIV 487
L+ ++ T S+W +C+ S H + P V
Sbjct: 317 LFTMILVTLSIWITVCVLNVHFRSPSTHNMSPWV 350
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 37.9 bits (84), Expect = 1e-04
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 5/120 (4%)
Frame = +1
Query: 190 VNLTLHLRHANIRESXSTVRILADLXMNWIDXRLXWNAGEWGCXTWL-VSSERLXRPDXV 366
++ L ++H N+ E TV L + W L W + E+ + V S + PD +
Sbjct: 62 IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSYEIWVPD-I 120
Query: 367 LLNAAATTAGDYXL---RARVSNNGSVSCIKRLDINTPIAMXLXN-WPNDMQTCTFXXGS 534
++++ + D + V N+G++ C+ TP+ WP D+ CT S
Sbjct: 121 VMHSVTSVGIDLEMPSVECIVFNSGTILCVP-FTTYTPVCEYDHTWWPYDILNCTIHIAS 179
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 36.7 bits (81), Expect = 3e-04
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Frame = +1
Query: 271 NWIDXRLXWNAGEWGCXTWLVSSERLXRPDXVLLNAAAT---TAGDYXLRARVSNNGSVS 441
+W+D RL + G+ + R+ +PD N + T R+ +G V
Sbjct: 60 SWVDRRLAFQGGKETLALSISMLARIWKPDTYFYNGKHSYLHTITSPNKFVRLYQDGRVL 119
Query: 442 CIKRLDINTPIAMXLXNWPNDMQTCTFXXGS 534
RL I M L N+P D Q C GS
Sbjct: 120 YSSRLTIKAGCPMNLENFPMDTQRCPLQFGS 150
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 36.7 bits (81), Expect = 3e-04
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
Frame = +1
Query: 151 RTIGSLPPHSKIVVNLTL-HLRHANIRESXSTVRILADLXMNWIDXRLXWNAGEW-GCXT 324
R +G+ + + L L L N++ T + + W D +L WN ++ G T
Sbjct: 37 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVWVE--QEWNDYKLKWNPDDYGGVDT 94
Query: 325 WLVSSERLXRPDXVLLNAAATTAGDYXL----RARVSNNGSVSCIKRLDINTPIAMXLXN 492
V SE + PD VL N A G+Y + +A + + G V + + +
Sbjct: 95 LHVPSEHIWLPDIVLYNNA---DGNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEIDVEY 151
Query: 493 WPNDMQTCTFXXGS 534
+P D QTC GS
Sbjct: 152 FPFDEQTCFMKFGS 165
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 36.3 bits (80), Expect = 4e-04
Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 3/120 (2%)
Frame = +1
Query: 184 IVVNLTLHLRHANIRESXSTVRILADLXMNWIDXRLXWNAGEW-GCXTWLVSSERLXRPD 360
+V L+LH ++ E + + W D L WNA E+ G V R+ RPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 361 XVLLNAAATTAGDYXLRAR--VSNNGSVSCIKRLDINTPIAMXLXNWPNDMQTCTFXXGS 534
+L N A + VS+ G V + + + + +P D Q C S
Sbjct: 92 TILYNNADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDIDVEFFPFDEQRCVLKWAS 151
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 35.9 bits (79), Expect = 5e-04
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Frame = +1
Query: 271 NWIDXRLXWNAGEWGCXTWLVSSERLXRPDXVLLNAAATTAGDYXLR---ARVSNNGSVS 441
+W D RL + + ER+ RPD N + + R+S +G +
Sbjct: 92 SWRDSRLSFLGPIKSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDIL 151
Query: 442 CIKRLDINTPIAMXLXNWPNDMQTCTFXXGS 534
RL I M L N+P D Q+C GS
Sbjct: 152 YSMRLTIKAKCPMELRNFPMDRQSCPLILGS 182
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 29.9 bits (64), Expect = 0.031
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 6/122 (4%)
Frame = +1
Query: 187 VVNLTLHLRH-ANIRESXSTVRILADLXMNWIDXRLXWN--AGEWGCXTWLVSSERLXRP 357
+V + L +R A I + + W+D RL +N G T L + R+ P
Sbjct: 60 IVRVNLFVRSIATISDIKMEYSVQLTFREQWLDERLRFNDFGGRLKYLT-LTDASRVWMP 118
Query: 358 DXVLLNAAATTAGDYXLR---ARVSNNGSVSCIKRLDINTPIAMXLXNWPNDMQTCTFXX 528
D N + + R+ NGSV R+ + M L +P D Q C+
Sbjct: 119 DLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLSCPMNLKLYPLDRQVCSLRM 178
Query: 529 GS 534
S
Sbjct: 179 AS 180
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 29.5 bits (63), Expect = 0.041
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Frame = +1
Query: 274 WIDXRLXWNAGEWGCXTWLVSSERLXR---PDXVLLNAA------ATTAGDYXLRARVSN 426
W D RL + G T V SE + PD +N ATT+ ++ R+ +
Sbjct: 67 WTDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHH 122
Query: 427 NGSVSCIKRLDINTPIAMXLXNWPNDMQTC 516
+GS++ RL I M L +P D Q C
Sbjct: 123 SGSITRSIRLTITASCPMNLQYFPMDRQLC 152
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 29.5 bits (63), Expect = 0.041
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Frame = +1
Query: 274 WIDXRLXWNAGEWGCXTWLVSSERLXR---PDXVLLNAA------ATTAGDYXLRARVSN 426
W D RL + G T V SE + PD +N ATT+ ++ R+ +
Sbjct: 67 WTDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHH 122
Query: 427 NGSVSCIKRLDINTPIAMXLXNWPNDMQTC 516
+GS++ RL I M L +P D Q C
Sbjct: 123 SGSITRSIRLTITASCPMNLQYFPMDRQLC 152
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 29.5 bits (63), Expect = 0.041
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Frame = +1
Query: 274 WIDXRLXWNAGEWGCXTWLVSSERLXR---PDXVLLNAA------ATTAGDYXLRARVSN 426
W D RL + G T V SE + PD +N ATT+ ++ R+ +
Sbjct: 6 WTDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHH 61
Query: 427 NGSVSCIKRLDINTPIAMXLXNWPNDMQTC 516
+GS++ RL I M L +P D Q C
Sbjct: 62 SGSITRSIRLTITASCPMNLQYFPMDRQLC 91
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 29.1 bits (62), Expect = 0.055
Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Frame = +1
Query: 262 LXMNWIDXRLXWNAGEWGCXTWLVSSERLXRPDXVLLNAAATTAGDYXLR---ARVSNNG 432
L W D RL ++ E +E++ PD N + D R R+S +G
Sbjct: 88 LNQYWKDERLAFSQEEEVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLSGDG 147
Query: 433 SVSCIKRLDINTPIAMXLXNWPNDMQTCT 519
SV+ R M L +P D Q CT
Sbjct: 148 SVTYGMRFTTTLACMMDLHYYPLDSQNCT 176
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 28.7 bits (61), Expect = 0.072
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Frame = +1
Query: 274 WIDXRLXWN--AGEWGCXTWLVSSERLXRPDXVLLNAAATTAGDYXLR---ARVSNNGSV 438
W+D RL +N G T L + R+ PD N + + R+ NGSV
Sbjct: 90 WLDERLRFNDFGGRLKYLT-LTDASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSV 148
Query: 439 SCIKRLDINTPIAMXLXNWPNDMQTCTFXXGS 534
R+ + M L +P D Q C+ S
Sbjct: 149 LYSIRISLTLSCPMNLKLYPLDRQVCSLRMAS 180
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,721
Number of Sequences: 438
Number of extensions: 3076
Number of successful extensions: 30
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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