Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_C07
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.9  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    27   2.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.3  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    26   7.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.7  

>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 121 MEVSAMPPMPLDFSMVRSGSDSPGVAVREESP 216
           ++V+ +PP P   S +R+G  S G   R  SP
Sbjct: 54  VDVTKLPPPPKHASQLRAGGSSTGSTPRTASP 85


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/60 (21%), Positives = 29/60 (48%)
 Frame = +3

Query: 432 IQTRTAGGVCGSRTSLKTPAAHSRRPTPDQAETQSELLRRRDRVYAEHITSIPPSPRRRT 611
           + T  +     +  S+ +PA+ S  P P+Q   Q  L+ + D  +   + S+  +P +++
Sbjct: 171 VSTSASSSNASNTVSVTSPASSSATPLPNQPSQQQFLVSKND-AFTTFVHSVHNTPMQQS 229


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 481  KLLPLTAGALPRTRRKPSRSY*DGGTGFTQSTLHPSRRPPDAGPAAASNM 630
            K LP+ A A P+T   PS S          +T  P  +     P+A+SN+
Sbjct: 1177 KELPVPAPAAPQTLNPPSVSTVQQSKPIESNTHTPEVKATSESPSASSNL 1226


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 464 ESNLTKNSCRSQPAPYPGPGGNPVGAIETAGQ 559
           +S+L+  SC S P P P    N V +I+   Q
Sbjct: 188 DSSLSPVSCSSFPKPIPNHFENDVSSIQNTNQ 219


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +2

Query: 419 RKSPDPNPHGRWGMWESNLTKNSCRSQ-PAPYPGPGGNPVGAIETAGQG 562
           ++ P P P  R    +  +   S  S  P P P P  N  G+I    QG
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQG 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,422,129
Number of Sequences: 5004
Number of extensions: 69447
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)