Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_C07
         (843 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical ...    31   1.4  
U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor staphylo...    30   2.4  
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p...    28   7.2  
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p...    28   7.2  
AF099915-2|AAC68772.1|  262|Caenorhabditis elegans Hypothetical ...    28   7.2  
Z29560-1|CAA82655.1|  367|Caenorhabditis elegans Hypothetical pr...    28   9.5  
L13200-7|AAA28189.1|  206|Caenorhabditis elegans Prion-like-(q/n...    28   9.5  
AL021470-3|CAA16291.2|  414|Caenorhabditis elegans Hypothetical ...    28   9.5  
AF016452-1|AAB66013.1|  511|Caenorhabditis elegans Hypothetical ...    28   9.5  

>AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical
           protein Y53H1A.1 protein.
          Length = 613

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +2

Query: 422 KSPDPNPHGRWGMWESNLTKNSCRSQPAPYPGPGGNPV 535
           + P P  H  WG W +N      R  P P  GP G PV
Sbjct: 54  RHPGPPAHQDWGDWSAN-RDEQWRGPPGP-SGPSGPPV 89


>U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor
           staphylococcal nuclease homologprotein 1 protein.
          Length = 914

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 23/64 (35%), Positives = 27/64 (42%)
 Frame = +1

Query: 490 PLTAGALPRTRRKPSRSY*DGGTGFTQSTLHPSRRPPDAGPAAASNMTAGSLGRRAKSPI 669
           P  + A P  RR   +S   G     Q    P   PP       SN+TA  LGRR   P 
Sbjct: 14  PAASSANPAVRRGLVKSVLSGDAVILQG--QPHNGPPPEWTVYLSNVTAPRLGRR---PT 68

Query: 670 DSAA 681
           DSA+
Sbjct: 69  DSAS 72


>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
           protein F07A11.4 protein.
          Length = 1095

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 568 QSTLHPSRRPPDAGPAAASNMTAGSLGRRAKSPIDSAA 681
           QS + P   PP   P+AASN  +G L R   + + S+A
Sbjct: 356 QSLVPPPPPPPPPPPSAASNGRSGYLPRSVSAAVISSA 393


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 25/86 (29%), Positives = 35/86 (40%)
 Frame = +1

Query: 511 PRTRRKPSRSY*DGGTGFTQSTLHPSRRPPDAGPAAASNMTAGSLGRRAKSPIDSAALHL 690
           PR RR PS+S         +S     RR P   P A     + S G +++SP    +   
Sbjct: 437 PRRRRSPSQS---------KSPAPRRRRSPSKSPQAPRRRRSPS-GSKSRSPRRRRSPAA 486

Query: 691 PPERSRDRDLQRRPTSRFLPTQSGWS 768
            P R +    +R P  R  P+ S  S
Sbjct: 487 APRRRQSPQRRRSPRRRRSPSSSSRS 512



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 24/89 (26%), Positives = 40/89 (44%)
 Frame = +3

Query: 426 RRIQTRTAGGVCGSRTSLKTPAAHSRRPTPDQAETQSELLRRRDRVYAEHITSIPPSPRR 605
           +R ++R+      +R      A+ S  P P +A+++S+    R R  +   +  PP+PRR
Sbjct: 332 KRAKSRSKSPPAPARRRRSPSASKSPPPAPKRAKSRSKSPPARRR-RSPSASKSPPAPRR 390

Query: 606 RTGGRQQHDRRFPRSTGQEPD**CRATPS 692
           R   R     R P    + P    R +PS
Sbjct: 391 R---RSPSKSRSPAPKREIPPARRRRSPS 416


>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
           protein T05C12.10 protein.
          Length = 1169

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -1

Query: 675 TINRALGPSTEGTGGHVAGGRRSGVWGTAG 586
           T+N A G ST GTG     G  SG+ G+AG
Sbjct: 364 TVNGAGGVSTTGTGAQT--GNESGLGGSAG 391


>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
           protein T05C12.10 protein.
          Length = 1169

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -1

Query: 675 TINRALGPSTEGTGGHVAGGRRSGVWGTAG 586
           T+N A G ST GTG     G  SG+ G+AG
Sbjct: 364 TVNGAGGVSTTGTGAQT--GNESGLGGSAG 391


>AF099915-2|AAC68772.1|  262|Caenorhabditis elegans Hypothetical
           protein E02H9.7 protein.
          Length = 262

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 477 LKTPAAHSRRPTPDQAETQSELL-RRRDRVYAEHITSIPPSPRRRTGGRQQ 626
           L +P   +  PTPD AET  E+L      V A   +  P +P   T  +++
Sbjct: 153 LCSPVKATTTPTPDTAETSPEVLASSTSTVVASTTSETPTTPAPVTSAKEE 203


>Z29560-1|CAA82655.1|  367|Caenorhabditis elegans Hypothetical
           protein K03H1.1 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/57 (36%), Positives = 25/57 (43%)
 Frame = +2

Query: 407 GLCLRKSPDPNPHGRWGMWESNLTKNSCRSQPAPYPGPGGNPVGAIETAGQGLRRAH 577
           G+C+  S DP P    G W  N          A    PGG  + AIE A  GL+R H
Sbjct: 237 GVCV--SLDPKPKVTMGDW--NGAGCHTNFSTAEMRAPGG--IAAIEAAMTGLKRTH 287


>L13200-7|AAA28189.1|  206|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 96
           protein.
          Length = 206

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 392 GEKPSGLC-LRKSP-DPNPHGRWGMWESNLTKNSCRSQPAPYPGPGGNP 532
           G  P+ L  +R+ P DP+  G  G   S+ T N   +  +PY  P  NP
Sbjct: 108 GTTPNRLSNMRRRPVDPSISGNVGYGTSSQTSNPYGASASPYGAPQQNP 156


>AL021470-3|CAA16291.2|  414|Caenorhabditis elegans Hypothetical
           protein Y17D7A.1 protein.
          Length = 414

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
 Frame = -1

Query: 324 LVSANVLGLE-SHELIYWLAQAPLRGNHSEGAVCRRPGRLFSHGHPWRITTTP 169
           + S ++L  E S ELI  +   P RG H     CR     F      + T  P
Sbjct: 4   IASTSILSQEESSELICAVCSQPARGRHFGAVACRACAAFFRRADAAKTTVKP 56


>AF016452-1|AAB66013.1|  511|Caenorhabditis elegans Hypothetical
           protein T05H4.7 protein.
          Length = 511

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +2

Query: 443 HGRWG-MWESNLTKNSCRSQPAPYPGP 520
           H  WG MW+S     SC   PAPY GP
Sbjct: 429 HPDWGNMWKSQ----SCDCAPAPYGGP 451


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,647,298
Number of Sequences: 27780
Number of extensions: 436739
Number of successful extensions: 1344
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)