Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_C07
         (843 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    26   0.50 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   2.0  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    23   2.7  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   8.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   8.1  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = +3

Query: 495 HSRRPTPDQAETQSELLRRRDRVYAEHITSIPPSPRRRTGGRQQHDRR 638
           H +    +Q   + E +R R+R   EH   +    +++   +QQ D++
Sbjct: 56  HRQHSKNEQQRKEMEQMREREREQREHSDRVTSQQQQQQQQQQQQDQQ 103


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 500 PAPYPGPGGNPVGAIETA 553
           P+P  GPGG P   I+ A
Sbjct: 396 PSPPRGPGGVPTSVIQAA 413


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +2

Query: 434 PNPHGRWGMWESNLTKNSCRSQPAPYP 514
           P P G W   +  + +  C   P P+P
Sbjct: 132 PRPMGPWISVQEQVPRFRCIGPPTPFP 158


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 89  MLCFVPF--IN*LWKSVLCRRCRWTFRW*GVVVILQGW 196
           ++C++PF  +N LW S  C +C W  +     V   GW
Sbjct: 345 IICWLPFFVVN-LW-SGFCSQCIWQEKIVFAAVTWLGW 380


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 434 DPAIFSDTAHW 402
           DPA++ D  HW
Sbjct: 855 DPAVYEDWRHW 865


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 51  PRVDPRIALIYFPCYVSYRLLINYGSQCYAADAVGLFDGEEW 176
           P+ D +  ++YF   V     I+  S  YAAD   +F  + W
Sbjct: 54  PKKDGQATVVYFHVTVMGLDSIDENSMTYAAD---IFFAQTW 92


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 12/41 (29%), Positives = 16/41 (39%)
 Frame = +2

Query: 470 NLTKNSCRSQPAPYPGPGGNPVGAIETAGQGLRRAHYIHPA 592
           N +KN           P    V A    G GL   ++I+PA
Sbjct: 512 NFSKNPVTVNLTKLHPPADLVVYACNVVGSGLSHGNWIYPA 552


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,920
Number of Sequences: 438
Number of extensions: 5315
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)