Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_C05
         (936 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC112201-1|AAI12202.1| 1849|Homo sapiens BTAF1 RNA polymerase II...    43   0.001
AL365398-1|CAI14103.1| 1849|Homo sapiens BTAF1 RNA polymerase II...    43   0.001
AL359198-2|CAH73478.1| 1849|Homo sapiens BTAF1 RNA polymerase II...    43   0.001
AJ001017-1|CAA04475.1| 1849|Homo sapiens TBP associated factor p...    43   0.001
AF038362-1|AAC04573.1| 1849|Homo sapiens TBP-associated factor 1...    43   0.001
Z82170-1|CAI42602.1|  361|Homo sapiens POU domain, class 3, tran...    31   8.0  
X82324-1|CAA57767.1|  361|Homo sapiens protein ( H.sapiens Brain...    31   8.0  

>BC112201-1|AAI12202.1| 1849|Homo sapiens BTAF1 RNA polymerase II,
           B-TFIID transcription factor-associated, 170kDa protein.
          Length = 1849

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 22/64 (34%), Positives = 37/64 (57%)
 Frame = +2

Query: 131 RNGAHLMGSEGDXYDFDENDFXLSTADAKERMAKQRQQLNTRLGLDVAANLGVXLTSIYT 310
           ++GA L+GS G   +F+  D      D KER+A+QR+ L  +LGL++   +G+    ++ 
Sbjct: 113 QHGASLLGSAGA--EFEVQDEKSGEVDPKERIARQRKLLQKKLGLNMGEAIGMSTEELFN 170

Query: 311 XXDL 322
             DL
Sbjct: 171 DEDL 174


>AL365398-1|CAI14103.1| 1849|Homo sapiens BTAF1 RNA polymerase II,
           B-TFIID transcription factor-associated, 170kDa (Mot1
           protein.
          Length = 1849

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 22/64 (34%), Positives = 37/64 (57%)
 Frame = +2

Query: 131 RNGAHLMGSEGDXYDFDENDFXLSTADAKERMAKQRQQLNTRLGLDVAANLGVXLTSIYT 310
           ++GA L+GS G   +F+  D      D KER+A+QR+ L  +LGL++   +G+    ++ 
Sbjct: 113 QHGASLLGSAGA--EFEVQDEKSGEVDPKERIARQRKLLQKKLGLNMGEAIGMSTEELFN 170

Query: 311 XXDL 322
             DL
Sbjct: 171 DEDL 174


>AL359198-2|CAH73478.1| 1849|Homo sapiens BTAF1 RNA polymerase II,
           B-TFIID transcription factor-associated, 170kDa (Mot1
           protein.
          Length = 1849

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 22/64 (34%), Positives = 37/64 (57%)
 Frame = +2

Query: 131 RNGAHLMGSEGDXYDFDENDFXLSTADAKERMAKQRQQLNTRLGLDVAANLGVXLTSIYT 310
           ++GA L+GS G   +F+  D      D KER+A+QR+ L  +LGL++   +G+    ++ 
Sbjct: 113 QHGASLLGSAGA--EFEVQDEKSGEVDPKERIARQRKLLQKKLGLNMGEAIGMSTEELFN 170

Query: 311 XXDL 322
             DL
Sbjct: 171 DEDL 174


>AJ001017-1|CAA04475.1| 1849|Homo sapiens TBP associated factor
           protein.
          Length = 1849

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 22/64 (34%), Positives = 37/64 (57%)
 Frame = +2

Query: 131 RNGAHLMGSEGDXYDFDENDFXLSTADAKERMAKQRQQLNTRLGLDVAANLGVXLTSIYT 310
           ++GA L+GS G   +F+  D      D KER+A+QR+ L  +LGL++   +G+    ++ 
Sbjct: 113 QHGASLLGSAGA--EFEVQDEKSGEVDPKERIARQRKLLQKKLGLNMGEAIGMSTEELFN 170

Query: 311 XXDL 322
             DL
Sbjct: 171 DEDL 174


>AF038362-1|AAC04573.1| 1849|Homo sapiens TBP-associated factor 172
           protein.
          Length = 1849

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 22/64 (34%), Positives = 37/64 (57%)
 Frame = +2

Query: 131 RNGAHLMGSEGDXYDFDENDFXLSTADAKERMAKQRQQLNTRLGLDVAANLGVXLTSIYT 310
           ++GA L+GS G   +F+  D      D KER+A+QR+ L  +LGL++   +G+    ++ 
Sbjct: 113 QHGASLLGSAGA--EFEVQDEKSGEVDPKERIARQRKLLQKKLGLNMGEAIGMSTEELFN 170

Query: 311 XXDL 322
             DL
Sbjct: 171 DEDL 174


>Z82170-1|CAI42602.1|  361|Homo sapiens POU domain, class 3,
           transcription factor 4 protein.
          Length = 361

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +2

Query: 152 GSEGDXYDFDENDFXLSTADAKERMAKQRQQLNTRLGL---DVAANLGVXLTSIYTXXDL 322
           G  G  +  D +D    T+D  E+ AKQ +Q   +LG    DV   LG    ++++   +
Sbjct: 173 GELGSHHCQDHSDEETPTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTI 232

Query: 323 C 325
           C
Sbjct: 233 C 233


>X82324-1|CAA57767.1|  361|Homo sapiens protein ( H.sapiens Brain 4
           mRNA. ).
          Length = 361

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +2

Query: 152 GSEGDXYDFDENDFXLSTADAKERMAKQRQQLNTRLGL---DVAANLGVXLTSIYTXXDL 322
           G  G  +  D +D    T+D  E+ AKQ +Q   +LG    DV   LG    ++++   +
Sbjct: 173 GELGSHHCQDHSDEETPTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTI 232

Query: 323 C 325
           C
Sbjct: 233 C 233


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,144,779
Number of Sequences: 237096
Number of extensions: 1405633
Number of successful extensions: 4354
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4354
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12270013262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)