Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_C03
(868 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0284 - 2082249-2082256,2082496-2083009 31 1.6
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 31 1.6
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182... 30 2.8
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 6.4
11_04_0420 - 17472120-17473487 28 8.4
08_02_0813 + 21459776-21461128 28 8.4
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.4
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892 28 8.4
>07_01_0284 - 2082249-2082256,2082496-2083009
Length = 173
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/60 (36%), Positives = 30/60 (50%)
Frame = +3
Query: 360 QPPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARFKFGSRMHNSDEMD 539
+PPP + +AP+ I AP AW LQF + I P + RL F FG + E+D
Sbjct: 73 EPPPPPSTTAPI--IAAP-----AWAPLLQFAATQQIIPISARL--FVFGVSKKRTTELD 123
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 30.7 bits (66), Expect = 1.6
Identities = 34/125 (27%), Positives = 47/125 (37%), Gaps = 8/125 (6%)
Frame = -3
Query: 398 IHGRGERSPRRWLQPR--------LAVPRQASTSVPRTPAKCCSPIXPAFQLSRLSIQFI 243
IHG+G RRW P A+ + A SPI P F + +
Sbjct: 410 IHGKGADMSRRWGNPMEMSADVDDAKTKTTATAAAAELTAMAISPI-PGFTGRGGAEASL 468
Query: 242 *RSASIRTVDSDSRMLARLKCRVRLTTILESGGDSRSYVARSESIMRDSDVAFSHSAALA 63
RS + DS LAR+ C SG S S+ + R + +A + AAL
Sbjct: 469 RRSLAAACASMDSSSLARILC--------SSGSSSSSHATLAARHFRPALLAAAEPAALV 520
Query: 62 IAQVR 48
+ VR
Sbjct: 521 VRAVR 525
>04_01_0159 -
1824343-1824405,1824485-1824595,1825282-1825448,
1825853-1826029,1826404-1826656
Length = 256
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -1
Query: 394 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPFXLRSNSVVCRSNS 245
T + S GGCS + PP AFRG+ + P + V CR+ S
Sbjct: 59 TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 222 HGGLGLTNVSTSQMQGQVDYDFGVGGRLPI 133
+GG L +Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>11_04_0420 - 17472120-17473487
Length = 455
Score = 28.3 bits (60), Expect = 8.4
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = -3
Query: 350 LAVPRQASTSVPRTPAKCC-SPIXPAFQLSRLSIQFI*RSASIRTVDSDSRMLARLKCRV 174
++VP Q + S + AK C S + P ++R+ + +A++R + LAR R
Sbjct: 84 VSVPVQFAGSETKAKAKGCESEMSPPRSVARIGRE----AAAVRVQAAARGFLARRMVRE 139
Query: 173 RLTTILESGGDSRSYVARSESIMRDS 96
E+ G +R A +E++ RD+
Sbjct: 140 VRAVEAEAEGVARKVAAEAEALRRDA 165
>08_02_0813 + 21459776-21461128
Length = 450
Score = 28.3 bits (60), Expect = 8.4
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +2
Query: 278 QGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISM 457
+G++ C WL + R P LL+ TT R V+ W K+ IS P+S+
Sbjct: 237 RGDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSI 288
Query: 458 QL 463
+L
Sbjct: 289 EL 290
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 392 GRGERSPRRWLQPRLAVPRQASTSVPRTP 306
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
Length = 291
Score = 28.3 bits (60), Expect = 8.4
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +2
Query: 275 TQGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPIS 454
T G CS++L R+W +++ + LRA +N S + +D+STP +
Sbjct: 131 TVGRSFCSSFLA---RIWNNTTPIVDTGLSPGYAALLRALCPSNASATATTAIDVSTPAT 187
Query: 455 MQLDN 469
LDN
Sbjct: 188 --LDN 190
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,900,840
Number of Sequences: 37544
Number of extensions: 438178
Number of successful extensions: 1245
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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