Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_C02
(845 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.5
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182... 31 1.5
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936... 30 2.0
07_01_0710 - 5355277-5355666 29 6.2
08_02_0813 + 21459776-21461128 28 8.1
04_01_0530 - 6928528-6929500,6929514-6930964 28 8.1
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.1
02_01_0054 - 404464-405152,406087-406618 28 8.1
01_05_0309 - 20713774-20713818,20713838-20713915,20714044-207142... 28 8.1
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892 28 8.1
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +3
Query: 378 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 530
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>04_01_0159 -
1824343-1824405,1824485-1824595,1825282-1825448,
1825853-1826029,1826404-1826656
Length = 256
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -2
Query: 409 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPLXLRSNSVVCRSNS 260
T + S GGCS + PP AFRG+ + P+ + V CR+ S
Sbjct: 59 TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107
>04_04_0959 +
29692740-29693035,29693102-29693267,29693433-29693612,
29693703-29693771,29693888-29694088,29694187-29694240,
29694325-29694386,29694488-29694620,29694789-29694899,
29695008-29695104,29695638-29695714,29696129-29696194,
29696431-29696583,29697392-29697447,29697524-29697584,
29697656-29697766,29698010-29698144,29698217-29698447,
29699001-29699075,29699161-29699282,29699381-29699453,
29699538-29699642,29699728-29699895,29700079-29700148,
29700224-29700375,29700574-29700651,29700744-29700836,
29700961-29701098,29701237-29701276,29701350-29701423,
29701777-29701911,29702345-29702464,29702778-29702939
Length = 1287
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/80 (28%), Positives = 30/80 (37%)
Frame = +3
Query: 84 CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPAFETC*HS*VRVHRANTGRSSNE 263
CG V H L V LP R + A C + +R HR ++ RS
Sbjct: 20 CGLAAVAAGQVRHSPLLRAPVPGLLPERQAPEGRRPLAASRCLPTCLRRHRRSSRRSHRR 79
Query: 264 LDRQTTELERRXSGAAALGW 323
R++ L RR LGW
Sbjct: 80 CRRRSPRLWRRSGSGFLLGW 99
>07_01_0710 - 5355277-5355666
Length = 129
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -2
Query: 766 PAXESRSRSTXXNTGAG-RQRVCRGA 692
PA ESR R++ N+G G R+RV GA
Sbjct: 93 PAGESRERTSAANSGEGRRRRVAEGA 118
>08_02_0813 + 21459776-21461128
Length = 450
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +2
Query: 293 QGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISM 472
+G++ C WL + R P LL+ TT R V+ W K+ IS P+S+
Sbjct: 237 RGDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSI 288
Query: 473 QL 478
+L
Sbjct: 289 EL 290
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 57 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 197
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 407 GRGERSPRRWLQPRLAVPRQASTSVPRTP 321
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>02_01_0054 - 404464-405152,406087-406618
Length = 406
Score = 28.3 bits (60), Expect = 8.1
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Frame = -3
Query: 330 EDTSQVLQPHSPCVPTQSFVDPIHL-------KICLYSHGGLGLTNVSMSQMQGQVDYDF 172
E S + P V + +VDP L K +YS G L L ++ S G D
Sbjct: 260 EGFSAAVAPTRAAVGSPGYVDPFFLRTGIVSKKSDVYSFGVLLLEAITGSPAAGIPGPDG 319
Query: 171 GVGGGVPIVRCEERVDHEG 115
G GGG R RV EG
Sbjct: 320 GAGGGNLTARLLPRVRTEG 338
>01_05_0309 -
20713774-20713818,20713838-20713915,20714044-20714222,
20714296-20714556,20715222-20715393,20715501-20715662,
20716435-20716863,20717729-20717785,20717872-20718842,
20719098-20719182,20719269-20719637,20719756-20720001,
20720090-20720362,20720663-20720827,20721328-20721556,
20721727-20722168,20723152-20724138,20724352-20724517,
20725070-20725728,20725820-20726186
Length = 2113
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 633 ARTVARWKLAWQCSXCLSGXAPRHTRWRPAPV 728
AR + WKLAW+CS ++ T + PV
Sbjct: 162 ARAESSWKLAWRCSPQVAQSLASATHFLQGPV 193
>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
Length = 291
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +2
Query: 290 TQGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPIS 469
T G CS++L R+W +++ + LRA +N S + +D+STP +
Sbjct: 131 TVGRSFCSSFLA---RIWNNTTPIVDTGLSPGYAALLRALCPSNASATATTAIDVSTPAT 187
Query: 470 MQLDN 484
LDN
Sbjct: 188 --LDN 190
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,727,759
Number of Sequences: 37544
Number of extensions: 525231
Number of successful extensions: 1610
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1609
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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