Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_C01
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    32   0.12 
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    29   0.82 
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   2.5  
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb...    27   4.4  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    27   4.4  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    26   5.8  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    26   7.6  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   7.6  

>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 117 SKETNATTNRLKKKHGWPLRLPTMPSVAPSPSRRNSSTV 1
           SK    + +  KKK+G P+    +PS++PSPS  N S +
Sbjct: 41  SKRLKRSYSATKKKNGNPVLESAIPSLSPSPSIENGSAM 79


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 17/58 (29%), Positives = 22/58 (37%)
 Frame = -3

Query: 370 RHPRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTDRRDWSLRARTTPSPGRPSPL 197
           R   + P ++       S    P   S       +S D  + S R  TTPS  RPS L
Sbjct: 237 RSATNTPVENTHPENPDSNTSTPTTRSEPLAGEGASIDAENASSRQETTPSDSRPSTL 294


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1157

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 661  CDMVDSQKSSIAXQDASLPSIVATTRGSERSSPNDRDEGG 542
            CDM+D+Q   +A    S  S  +  RG++ +S   +   G
Sbjct: 1063 CDMMDAQVRDLANAAESQESFYSKARGNDSTSKTAKSSSG 1102


>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 141 IEGSPIITSKETNATTNRLKKKHGWPLRLPTMPSVA-PSPSRRNSSTV 1
           ++G   +T K+TN TT    K      ++   PSV+  S SR   STV
Sbjct: 197 VDGDSPLTEKDTNLTTPATLKASDQQRKVLEKPSVSKQSSSRTRLSTV 244


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = -3

Query: 712 SVRKGKSXPFFRSAASXCDMVDSQKSSIAXQDASLPSIVATTRGSERSSPNDRDEGG 542
           +  KG S P   SAA+    V S   S A   A+  +I + T  S  +SP      G
Sbjct: 239 AANKGVSTPAVSSAAASSSAVVSSVVSSATSVAASSTISSATSSSASASPTSSSVSG 295


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 331 GRTASTVRRPADGSAKRRDHASSTDRRDWSLRARTTPSPGRPS 203
           GR++ T  +P   S+ R +H  S +  +  + AR   S G+PS
Sbjct: 410 GRSSITEGKPFLSSSLRFEHVPSANDLNSVVNARVEKSTGQPS 452


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 331 GRTASTVRRPADGSAKRRDHASSTDRRDWSLRARTTPSPGRPSP 200
           G   S +  P+       ++ S TD  +  LR RT+P+   P P
Sbjct: 335 GTRRSPLNSPSQLDPISNENESDTDDSNTGLRNRTSPTAAPPPP 378


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 22/77 (28%), Positives = 34/77 (44%)
 Frame = -2

Query: 419 PAKTTMAGQHLRQPEGEASAVAAHPVRENRADRLDGTEAGRRVRQAARPRLQHGPPRLEP 240
           PA+ T    +  QP G AS + A P   +  +        +  +  ARP+  + PP    
Sbjct: 74  PARPTSQRPNSWQP-GNASTMYASPPPSSNYNT--AKPPYQTSQFYARPQSSYAPPPSGR 130

Query: 239 PRSNYSFAGAPFPPVYL 189
           PR +Y     P+PP Y+
Sbjct: 131 PRISY-----PYPPGYM 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,895
Number of Sequences: 5004
Number of extensions: 54022
Number of successful extensions: 177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)