Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_C01
(837 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0049 + 17497255-17497908 39 0.006
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 32 0.49
04_04_0822 + 28352941-28353825,28353863-28354016,28354714-283547... 31 1.5
09_04_0379 - 17094540-17094868,17095354-17095717 30 2.6
05_06_0227 + 26565169-26566380 30 2.6
01_06_0725 + 31508156-31508277,31508950-31509118,31509311-315094... 30 2.6
01_06_0393 + 28968873-28968918,28969048-28969084,28969165-289693... 30 2.6
09_03_0139 + 12692844-12694982 29 3.5
05_03_0475 + 14486969-14487140,14487215-14487338,14487424-144875... 29 4.6
12_01_0982 + 9945920-9946066,9946185-9946254,9946481-9946526,994... 29 6.1
12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232 29 6.1
07_01_0217 + 1620625-1621419,1621982-1622152,1622581-1622865,162... 29 6.1
01_01_0164 + 1403635-1403708,1403960-1403999,1404103-1404178,140... 29 6.1
06_03_1501 + 30612643-30613310,30613396-30613501,30613732-306139... 28 8.0
05_07_0057 - 27386081-27386164,27386317-27386379,27386584-273866... 28 8.0
04_03_0884 + 20543084-20543638 28 8.0
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 28 8.0
02_04_0395 + 22590097-22590343,22590566-22590921 28 8.0
01_06_0353 - 28647452-28647477,28647568-28649134 28 8.0
01_01_0690 - 5306754-5307047,5307107-5307279,5308223-5308370,530... 28 8.0
>05_04_0049 + 17497255-17497908
Length = 217
Score = 38.7 bits (86), Expect = 0.006
Identities = 24/63 (38%), Positives = 27/63 (42%)
Frame = -3
Query: 385 VSRKVRHPRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTDRRDWSLRARTTPSPGRP 206
V R R R R T + TG RR A S +R + D R W RT P P P
Sbjct: 62 VGRNPRRRRERETPTRETGGVTRAARREA-ASRERGERGDGDDNRIWRRSNRTAPPP--P 118
Query: 205 SPL 197
SPL
Sbjct: 119 SPL 121
>01_07_0248 + 42261373-42261609,42261733-42261905,42261986-42262058,
42262148-42262282,42262352-42262562,42262886-42263034,
42263169-42263267,42263821-42263989,42264176-42264308,
42264600-42264694,42264774-42264882,42265136-42265295,
42265433-42265594,42265814-42265985,42266254-42266402,
42266914-42266951,42267779-42267839,42267913-42268155,
42268233-42268315,42269521-42269609,42270449-42270495,
42270576-42270656,42270737-42270899,42271077-42271267,
42271691-42271762
Length = 1097
Score = 32.3 bits (70), Expect = 0.49
Identities = 22/72 (30%), Positives = 31/72 (43%)
Frame = -3
Query: 424 RYRPKQPWPVNICVSRKVRHPRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTDRRDW 245
R +P P +R++ PR +P S R + +RR AD S RR + RR
Sbjct: 1014 RRKPASPPRKRTPPNRRIESPRRQPDPSPRRRPDSPPIRRRADASPVRRGD-TPPRRRPG 1072
Query: 244 SLRARTTPSPGR 209
S TTP +
Sbjct: 1073 SPVTTTTPKAAK 1084
>04_04_0822 +
28352941-28353825,28353863-28354016,28354714-28354754,
28355060-28355310,28355411-28355591,28356138-28356323,
28356396-28356569,28356992-28357150,28357424-28357501,
28357612-28357748,28357980-28358044,28358115-28358148,
28358216-28358372,28359135-28359196,28360041-28360118,
28360940-28361042
Length = 914
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 305 AGRRVRQAARPRLQHGPP-RLEPPRSNYSFAGAP 207
AG+ R RP+ QH PP R PPR ++ + P
Sbjct: 83 AGKSTRVLNRPQRQHSPPGRALPPRESFRYNPKP 116
>09_04_0379 - 17094540-17094868,17095354-17095717
Length = 230
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 394 NICVSRKVRHPRSRPTQSARTGRTASTVRRPADG 293
N + R++RH +PT AR G + +PA G
Sbjct: 176 NRAIPRRIRHDLEKPTDGARAGGRKRGIGKPAFG 209
>05_06_0227 + 26565169-26566380
Length = 403
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -1
Query: 540 RCSSNPRATRPMC-VPLCLPRRGQRSGGTAPSV 445
RCS N R +RP V C P RGQ +P V
Sbjct: 367 RCSDNGRCSRPPSQVERCFPERGQSRSKYSPPV 399
>01_06_0725 +
31508156-31508277,31508950-31509118,31509311-31509406,
31510037-31510097,31510387-31510451,31511104-31511178,
31511276-31511351,31512140-31512303,31512398-31512421
Length = 283
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = +3
Query: 459 CHHCADRDEEDTAEHTLAALLWDLTSNAP 545
CH D DEEDT H A L D T N P
Sbjct: 45 CHQTNDEDEEDTRSHHEALL--DRTKNKP 71
>01_06_0393 +
28968873-28968918,28969048-28969084,28969165-28969384,
28969557-28969715,28969831-28969950,28972154-28972240,
28972329-28972418,28972516-28972602,28972761-28972877,
28972945-28973028,28973585-28975324,28975670-28975816,
28975998-28976431,28976523-28976667
Length = 1170
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 241 LRARTTPSPGRPSPLCTYQFLGWKG*SCMSHRDNRRQS 128
L+A P+PG+P +C FL K S+ NRR +
Sbjct: 859 LKAALAPTPGKPHRVCDSCFLKLKAAETGSNNSNRRNA 896
>09_03_0139 + 12692844-12694982
Length = 712
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +3
Query: 495 AEHTLAALLWDLTSNAPPSSRSLGEDLSLPRVVATML 605
A+H AA+L+ L+SN+P S+ +G +P + T++
Sbjct: 497 AQHNAAAVLFYLSSNSPDSAEEIGR---IPEAIPTLV 530
>05_03_0475 +
14486969-14487140,14487215-14487338,14487424-14487559,
14487663-14488997
Length = 588
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 555 ATRAARCSSNPRATRPMCVPLCLPRRGQRSGGTAPSVP 442
AT A +S+PR+T P C RRG S + S P
Sbjct: 276 ATPGAAGTSSPRSTAPACQQPAATRRGANSVARSGSTP 313
>12_01_0982 +
9945920-9946066,9946185-9946254,9946481-9946526,
9947009-9947068,9947484-9947775
Length = 204
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 549 RAARCSSNPRATRPMCVPLC 490
R R NPR RP+CVP C
Sbjct: 20 RTVRHPHNPRHARPLCVPPC 39
>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
Length = 1035
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = -3
Query: 307 RPADGSAK---RRDHASSTDRRDWSLRARTTPSPGR 209
RP D + R D DRR R R TPSPGR
Sbjct: 89 RPRDDRGRDGPRDDRVRHGDRRPHDYRPRRTPSPGR 124
>07_01_0217 +
1620625-1621419,1621982-1622152,1622581-1622865,
1623113-1623262
Length = 466
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -2
Query: 392 HLRQPEGEASAVAAHPVRENRADRLDGTEAGRRVRQAARPRLQ 264
HLR P G A A A ++ R+DG E GR V PRL+
Sbjct: 106 HLRPPPGGAFAALATATIQSC--RVDGGELGRLVSSPQCPRLE 146
>01_01_0164 +
1403635-1403708,1403960-1403999,1404103-1404178,
1404680-1405827
Length = 445
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 172 KG*SCMSHR-DNRRQSYNYEQGNQRHYQQTQKE 77
KG S H+ N +Q +QG Q+H QQ QK+
Sbjct: 106 KGGSNQGHKGSNNQQKQQQQQGQQQHGQQHQKQ 138
>06_03_1501 +
30612643-30613310,30613396-30613501,30613732-30613934,
30614211-30614502
Length = 422
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 309 RTVEAVRPVLADWVGRDRGCLTFRLTQMLTGHGCFGRYLFKIAGREPTA 455
+ VE + LADWV + G T TG C+G L + ++P+A
Sbjct: 190 KNVEMLSEHLADWVSEEDGKKIVFHTFSNTGWLCYGVILENLQRQDPSA 238
>05_07_0057 -
27386081-27386164,27386317-27386379,27386584-27386637,
27386768-27386881,27386965-27387192
Length = 180
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 156 CLIEIIEGSPIITSKETNATTNRLKKK-HGWPLRLPTM 46
C++EI++G ++ ++ TN LKKK W L T+
Sbjct: 129 CIVEIVDGKELL-NERTNTENRYLKKKPESWRLACQTI 165
>04_03_0884 + 20543084-20543638
Length = 184
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 260 GPPRLEPPRSNYSFAGAPFPP 198
GP + PPRS ++ A AP PP
Sbjct: 10 GPMAMAPPRSGHATAAAPPPP 30
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 28.3 bits (60), Expect = 8.0
Identities = 21/82 (25%), Positives = 31/82 (37%)
Frame = -2
Query: 443 PSGYFEKVPAKTTMAGQHLRQPEGEASAVAAHPVRENRADRLDGTEAGRRVRQAARPRLQ 264
P+G K +M Q +R E + +A EN+ + + A V A ++
Sbjct: 214 PAGVGSMSMNKVSMQSQAMRMSSHEITTIAGAGRVENKVSTIAPSAAAAAVASAGGGQVP 273
Query: 263 HGPPRLEPPRSNYSFAGAPFPP 198
PP PP A P PP
Sbjct: 274 AAPP---PPAGPPPPAPPPLPP 292
>02_04_0395 + 22590097-22590343,22590566-22590921
Length = 200
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +2
Query: 542 AALVAVIGRGPLAAARRGYDARQRGVLXGDARLLRVHH 655
A L A I R P A R+G +R G R +R HH
Sbjct: 4 AGLAAAISRAPGAGGRKGSGRPERRRRRGSWRWIRRHH 41
>01_06_0353 - 28647452-28647477,28647568-28649134
Length = 530
Score = 28.3 bits (60), Expect = 8.0
Identities = 21/67 (31%), Positives = 29/67 (43%)
Frame = -2
Query: 398 GQHLRQPEGEASAVAAHPVRENRADRLDGTEAGRRVRQAARPRLQHGPPRLEPPRSNYSF 219
G HLR+P + A P R A D R R+ A ++ RL P +++S
Sbjct: 27 GPHLRRP------LRAAPHRARCAS--DAATTATRHRRPAEENIREEAARLRGPGNDFSA 78
Query: 218 AGAPFPP 198
PFPP
Sbjct: 79 WYVPFPP 85
>01_01_0690 -
5306754-5307047,5307107-5307279,5308223-5308370,
5309110-5309356,5309694-5309839,5312482-5312707,
5313652-5313874,5314054-5314202,5315345-5315514,
5316064-5316135,5317610-5317741,5317813-5317900,
5319440-5319656,5320123-5320306,5320644-5320727,
5321148-5321242,5321519-5321562,5321707-5322367,
5323053-5323356
Length = 1218
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 119 RARKPTPLPTDSK--RSMGGPYGCLQCQVWLLPQ 24
R P+P+ S+ +M GP G C +W++PQ
Sbjct: 248 RVSTPSPVRDLSRCVENMAGPSGSPPCPIWVMPQ 281
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,888,162
Number of Sequences: 37544
Number of extensions: 514441
Number of successful extensions: 2219
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2216
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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