Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_C01
(837 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical... 32 0.44
AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical... 32 0.44
AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical ... 32 0.44
AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical ... 32 0.44
Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical pr... 32 0.58
Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical pr... 32 0.58
Z83117-1|CAB05569.1| 220|Caenorhabditis elegans Hypothetical pr... 30 1.8
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 30 1.8
Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical pr... 30 2.3
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 30 2.3
L14433-2|AAA27978.1| 410|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 29 3.1
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 29 3.1
Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z68297-2|CAA92594.3| 522|Caenorhabditis elegans Hypothetical pr... 28 7.2
AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical ... 28 7.2
Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical pr... 28 9.5
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. 28 9.5
AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical ... 28 9.5
AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical ... 28 9.5
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ... 28 9.5
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ... 28 9.5
>AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical
protein T08B2.5f protein.
Length = 838
Score = 32.3 bits (70), Expect = 0.44
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 1/123 (0%)
Frame = -3
Query: 382 SRKVRHPRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTDRRDWS-LRARTTPSPGRP 206
+R+ R RSR ++ R GR+ S S RRD SS RRD S R+R+ PS
Sbjct: 27 AREARRSRSR-SRDRRGGRSRSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPPSSANG 85
Query: 205 SPLCTYQFLGWKG*SCMSHRDNRRQSYNYEQGNQRHYQQTQKEAWVALTAAYNAKCGSFP 26
S W S + RR+S +Y + R+ ++ + + ++ Y+ P
Sbjct: 86 SS-------HW---SSSNRHSRRRRSRSYSRERDRNSRRDDRRSNLSNNDRYSDWNPGVP 135
Query: 25 KQK 17
K
Sbjct: 136 SNK 138
>AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical
protein T08B2.5c protein.
Length = 866
Score = 32.3 bits (70), Expect = 0.44
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 1/123 (0%)
Frame = -3
Query: 382 SRKVRHPRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTDRRDWS-LRARTTPSPGRP 206
+R+ R RSR ++ R GR+ S S RRD SS RRD S R+R+ PS
Sbjct: 55 AREARRSRSR-SRDRRGGRSRSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPPSSANG 113
Query: 205 SPLCTYQFLGWKG*SCMSHRDNRRQSYNYEQGNQRHYQQTQKEAWVALTAAYNAKCGSFP 26
S W S + RR+S +Y + R+ ++ + + ++ Y+ P
Sbjct: 114 SS-------HW---SSSNRHSRRRRSRSYSRERDRNSRRDDRRSNLSNNDRYSDWNPGVP 163
Query: 25 KQK 17
K
Sbjct: 164 SNK 166
>AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical
protein T08B2.5a protein.
Length = 924
Score = 32.3 bits (70), Expect = 0.44
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 1/123 (0%)
Frame = -3
Query: 382 SRKVRHPRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTDRRDWS-LRARTTPSPGRP 206
+R+ R RSR ++ R GR+ S S RRD SS RRD S R+R+ PS
Sbjct: 113 AREARRSRSR-SRDRRGGRSRSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPPSSANG 171
Query: 205 SPLCTYQFLGWKG*SCMSHRDNRRQSYNYEQGNQRHYQQTQKEAWVALTAAYNAKCGSFP 26
S W S + RR+S +Y + R+ ++ + + ++ Y+ P
Sbjct: 172 SS-------HW---SSSNRHSRRRRSRSYSRERDRNSRRDDRRSNLSNNDRYSDWNPGVP 221
Query: 25 KQK 17
K
Sbjct: 222 SNK 224
>AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical
protein T08B2.5b protein.
Length = 925
Score = 32.3 bits (70), Expect = 0.44
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 1/123 (0%)
Frame = -3
Query: 382 SRKVRHPRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTDRRDWS-LRARTTPSPGRP 206
+R+ R RSR ++ R GR+ S S RRD SS RRD S R+R+ PS
Sbjct: 114 AREARRSRSR-SRDRRGGRSRSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPPSSANG 172
Query: 205 SPLCTYQFLGWKG*SCMSHRDNRRQSYNYEQGNQRHYQQTQKEAWVALTAAYNAKCGSFP 26
S W S + RR+S +Y + R+ ++ + + ++ Y+ P
Sbjct: 173 SS-------HW---SSSNRHSRRRRSRSYSRERDRNSRRDDRRSNLSNNDRYSDWNPGVP 222
Query: 25 KQK 17
K
Sbjct: 223 SNK 225
>Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical protein
F52G2.2a protein.
Length = 1319
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 290 RQAARPRLQHGPPR-LEPPRSNYSFAGAPFPPVYLPIS 180
+Q+ +PR P L PP S SF GAP PP Y +S
Sbjct: 1221 QQSYQPRYNGAPSGPLPPPSSQSSFNGAPAPPHYSEMS 1258
>Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical protein
F52G2.2b protein.
Length = 1129
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 290 RQAARPRLQHGPPR-LEPPRSNYSFAGAPFPPVYLPIS 180
+Q+ +PR P L PP S SF GAP PP Y +S
Sbjct: 1031 QQSYQPRYNGAPSGPLPPPSSQSSFNGAPAPPHYSEMS 1068
>Z83117-1|CAB05569.1| 220|Caenorhabditis elegans Hypothetical
protein M04C7.3 protein.
Length = 220
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -3
Query: 349 TQSARTGRTASTVRRPADGSAKRRDHASSTDRRDW--SLRARTTPSPGRPSPLC 194
+QS R ++ VR GSA DHA++ +R + S R RT PSPG C
Sbjct: 157 SQSLRQNQSRQVVR----GSAPITDHAATRNRGRYTASGRRRTAPSPGSFGGFC 206
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 379 RKVRHPRSRPTQSARTGRTASTVR-RPADGSAKRRDHASSTDRRDWSLRARTTPSP 215
R+ R PR R ++S R R+ S R R S RD S DRRD S +P P
Sbjct: 114 RRSRSPRRR-SRSPRYSRSRSPRRSRSRTRSPPSRDRRDSPDRRDNSRSRSRSPPP 168
>Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical
protein C34B7.4 protein.
Length = 617
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/57 (24%), Positives = 31/57 (54%)
Frame = -2
Query: 428 EKVPAKTTMAGQHLRQPEGEASAVAAHPVRENRADRLDGTEAGRRVRQAARPRLQHG 258
++ P+ ++ ++LR+P + + ++ P+ ++ +RLD TE R L+HG
Sbjct: 32 QQTPSSSSSKRKNLRKPSTDDTPSSSEPL--SKKNRLDSTETAEEDNTRRRRTLKHG 86
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -3
Query: 370 RHPRSRPTQSARTGRTASTVRR--PADGSAKRRDHASSTDRRDWSLRARTTPSPGRP 206
R RSR + +R R+ S+ R P S +R + S + +RD LRA + S P
Sbjct: 104 RRSRSRDRKRSRRSRSRSSSRSRSPVRESRRRSESRSPSPKRDLQLRANISVSYSSP 160
>L14433-2|AAA27978.1| 410|Caenorhabditis elegans Hypothetical
protein C50C3.8 protein.
Length = 410
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -3
Query: 700 GKSXPFFRSAASXCDMVDSQKSSIAXQDASLPSIVA 593
G++ P F+S S +M+++QK I +DA S+ A
Sbjct: 238 GQNSPVFKSMFSSPNMIEAQKGEIHIEDAKYDSVRA 273
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = -2
Query: 275 PRLQHGPPR-LEPPRSNYSFAGAPFPPVYLP 186
P GPPR PP F G P+PP + P
Sbjct: 325 PHFGMGPPRGFMPPPHPMMFRGGPYPPFFPP 355
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = -2
Query: 275 PRLQHGPPR-LEPPRSNYSFAGAPFPPVYLP 186
P GPPR PP F G P+PP + P
Sbjct: 325 PHFGMGPPRGFMPPPHPMMFRGGPYPPFFPP 355
>Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical
protein F28C1.1 protein.
Length = 672
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = -3
Query: 382 SRKVRHPRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTDRRDWSLRARTTPSPGR 209
SR RS P + +R+ RRP +++RR + RR S R R SP R
Sbjct: 403 SRSRSRSRSPPRRRSRSRSRTRDRRRPRRSNSRRRSRSRDRQRRSRS-RDRRRYSPDR 459
>Z68297-2|CAA92594.3| 522|Caenorhabditis elegans Hypothetical
protein F11A10.3 protein.
Length = 522
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/59 (32%), Positives = 24/59 (40%)
Frame = -1
Query: 180 LDGKDEVACLIEIIEGSPIITSKETNATTNRLKKKHGWPLRLPTMPSVAPSPSRRNSST 4
+DG+ E P K T + KKK P PT PS +PS S S+T
Sbjct: 96 IDGEVENGITSREHSPDPSTFKKTAKLQTKKKKKKESPPETPPTSPSPSPSRSVSPSTT 154
>AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical
protein K02F6.1 protein.
Length = 783
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = -3
Query: 361 RSRPTQSARTGRTASTVRRPADGSAKRRDHASSTDRRDWSLRARTTPSPGRPSPLCTYQ 185
R +P R S R+ GSA DH S+ R + R PSPG S +Y+
Sbjct: 717 RFQPGILLRHSLRQSHPRQVVRGSAPNTDHVSTRRRGRDTASGRDAPSPGIISGFLSYK 775
>Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -3
Query: 376 KVRHPRSRPTQSARTGRTASTVRRPADGSAK-RRDHASSTDRRDWS 242
++ HP P +S+ ++++ RRP + S++ SS+ RRD+S
Sbjct: 304 RMSHPMGPPRRSSGAPPSSASNRRPVESSSRGPPPPPSSSSRRDYS 349
>Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -3
Query: 376 KVRHPRSRPTQSARTGRTASTVRRPADGSAK-RRDHASSTDRRDWS 242
++ HP P +S+ ++++ RRP + S++ SS+ RRD+S
Sbjct: 304 RMSHPMGPPRRSSGAPPSSASNRRPVESSSRGPPPPPSSSSRRDYS 349
>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
Length = 1666
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 163 SCMSHRDNRRQSYNYEQGNQRHYQQTQKEAWVALTAAYNAKC 38
S S + N+ S N NQRH+QQ +A + A A+C
Sbjct: 456 STSSSQANQINSTNISNSNQRHFQQQTFYPEMADSRASTARC 497
>AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical
protein W03F11.6e protein.
Length = 1039
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 163 SCMSHRDNRRQSYNYEQGNQRHYQQTQKEAWVALTAAYNAKC 38
S S + N+ S N NQRH+QQ +A + A A+C
Sbjct: 454 STSSSQANQINSTNISNSNQRHFQQQTFYPEMADSRASTARC 495
>AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical
protein W03F11.6d protein.
Length = 1184
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 163 SCMSHRDNRRQSYNYEQGNQRHYQQTQKEAWVALTAAYNAKC 38
S S + N+ S N NQRH+QQ +A + A A+C
Sbjct: 454 STSSSQANQINSTNISNSNQRHFQQQTFYPEMADSRASTARC 495
>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
protein W03F11.6c protein.
Length = 1419
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 163 SCMSHRDNRRQSYNYEQGNQRHYQQTQKEAWVALTAAYNAKC 38
S S + N+ S N NQRH+QQ +A + A A+C
Sbjct: 454 STSSSQANQINSTNISNSNQRHFQQQTFYPEMADSRASTARC 495
>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
protein W03F11.6a protein.
Length = 1658
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 163 SCMSHRDNRRQSYNYEQGNQRHYQQTQKEAWVALTAAYNAKC 38
S S + N+ S N NQRH+QQ +A + A A+C
Sbjct: 454 STSSSQANQINSTNISNSNQRHFQQQTFYPEMADSRASTARC 495
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,869,729
Number of Sequences: 27780
Number of extensions: 347975
Number of successful extensions: 1340
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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