Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_C01
         (837 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   2.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   6.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.1  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 614 LAAEHRSHDARQREVLSQ*PRRGRRVARQI 525
           LA +      RQRE      +RG ++AR I
Sbjct: 433 LAGDESFRKRRQREAAGNCRKRGEKIARHI 462


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 699  PFRTDPSPSXRGR 737
            P  TDPSP  RGR
Sbjct: 984  PIMTDPSPFKRGR 996


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 546 PSSRSLGEDLSLPRVVATMLGSEASXKAMLDFCESTISXKEAAXRK 683
           PSS    + +SLP+++A  +G   + K    F E   S  + A RK
Sbjct: 236 PSSGHWQDQMSLPQMLADKIGKMVNQK----FSELIQSKPQHARRK 277


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 13  VPSAWGRSHTWHCRQP 60
           +PS  G    W CRQP
Sbjct: 477 MPSIRGAIQQWTCRQP 492


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 441  REPTAQCHHCADRDEEDTAEHTLAALL 521
            RE    C+ C   ++ED   H+LA  L
Sbjct: 1062 RERLYDCYVCYSPNDEDFVLHSLAVEL 1088


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/44 (22%), Positives = 18/44 (40%)
 Frame = -3

Query: 151 HRDNRRQSYNYEQGNQRHYQQTQKEAWVALTAAYNAKCGSFPKQ 20
           HR +  +    ++  Q H + T+K       AA+N     +  Q
Sbjct: 600 HRSSSTKGITIQEPPQWHTRSTEKRVSAGTPAAFNISTTIYENQ 643


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = -2

Query: 425  KVPAKTTMAGQHLRQPEGEASAVAAHPVRENRADRLDGTEAGRRVRQAARPRLQ 264
            +VPA+ T  G H+ +P   ++ +A + V +   +   G   G ++R  +   +Q
Sbjct: 1311 RVPARITSFGGHVVRPWRGSATLACNAVGDPTREWYKG--QGEQIRTDSTRNIQ 1362


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = -2

Query: 425  KVPAKTTMAGQHLRQPEGEASAVAAHPVRENRADRLDGTEAGRRVRQAARPRLQ 264
            +VPA+ T  G H+ +P   ++ +A + V +   +   G   G ++R  +   +Q
Sbjct: 1307 RVPARITSFGGHVVRPWRGSATLACNAVGDPTREWYKG--QGEQIRTDSTRNIQ 1358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,472
Number of Sequences: 438
Number of extensions: 5083
Number of successful extensions: 29
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)