Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_B18
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    31   0.29 
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    31   0.29 
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   3.6  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   8.3  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 648 ESLYEYWYASRENSPSSAESIQRPTKLQXAVA 743
           E+  +Y+ A REN P  A    RPTKL+ ++A
Sbjct: 22  EAAAKYYPAYRENVPKKARKAVRPTKLRASLA 53


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 17/72 (23%), Positives = 34/72 (47%)
 Frame = +3

Query: 234 IRAANNLCFKIESTKTTWYHMKTLVLDKLKTLYAADDKSENVSAKDRMSQMDWFIFDFAL 413
           + +++   F +      WY+   L   K+K L     +     +K  MSQ++ F   + L
Sbjct: 304 LSSSSKYIFWLAIATLPWYNWSILEKSKIKILPPILIRDSLKYSKPIMSQVENFFVHYPL 363

Query: 414 VHEKIDLIGKDG 449
           +  KI+++ K+G
Sbjct: 364 IMSKINVLEKEG 375


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 673 PPARTLLRRPSLYKDQPNYRXLLPGNTV 756
           P    +LR PSL+ D P Y  +L  N++
Sbjct: 468 PQNHPVLRAPSLFTDSPTYEDMLLLNSI 495


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 690 ESSRGRRTSTHIAIPWSSPSVDTNASAVASVSTDNP 583
           E+      S HIA   S+P  D  +S ++S+ TD P
Sbjct: 616 ENITSNEVSLHIASADSAPGFDKLSSDLSSLLTDEP 651


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,354,011
Number of Sequences: 5004
Number of extensions: 66244
Number of successful extensions: 215
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)