Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_B16
(861 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo... 31 0.16
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.64
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 28 1.5
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 27 2.6
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 2.6
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom... 26 6.0
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.0
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 26 7.9
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 26 7.9
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 26 7.9
>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
Smd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 115
Score = 31.5 bits (68), Expect = 0.16
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Frame = +2
Query: 26 AEIELKKEKSKERNSGSREVMRELSTSDTTFTLNPDTNE-LATKI---EEHTNLLLENTK 193
+EIEL + + E ++G V+++ + +N N+ L ++ + H+N++LEN K
Sbjct: 13 SEIELARLEEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVK 72
Query: 194 KM-VELRETLEG--GGAVDGTIRGSRMVPRPD 280
+M E + T G G A++ S+M R D
Sbjct: 73 EMWTEKKRTASGKKGKAINKDRFISKMFLRGD 104
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.64
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 515 PPRLEPPRSNYSFAGAPFPPRAKLATPP 432
PP PPRSN + P PP+ + A PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 28.3 bits (60), Expect = 1.5
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 9/76 (11%)
Frame = +2
Query: 20 KEAEIELKKEK--SKERNS-GSREVMREL--STSDTTFTLNPD-TNELATK---IEEHTN 172
K+ ++ L E SKE+ + R+ R++ S +D +L+ D +E+A K I+
Sbjct: 538 KQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLDKDFQDEMAAKQSMIDSAYT 597
Query: 173 LLLENTKKMVELRETL 220
L E+TKK+ +LRE L
Sbjct: 598 QLRESTKKLSDLREQL 613
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 181 QQQVCMFLDFSRQFIRVWVQCKCC 110
Q+QV D +F R+W QC+ C
Sbjct: 1020 QRQVAQVNDLEVRFARLWTQCQRC 1043
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 249 YGAPVWCHALTRKNVAALRRPQRAIAVRAIRG 344
YG C LT +N++A R Q AVR + G
Sbjct: 1011 YGPSFICKLLTHENISASHRQQLQSAVRNVLG 1042
>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 341
Score = 26.2 bits (55), Expect = 6.0
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 131 DTNELATKIEEHTNLLLENTKKMVELRETLEG-GGAVDGTIRGSRMVPRPD 280
+T EL EE L + + + + T+ G GA++GTI G +P+PD
Sbjct: 22 ETKELMLNNEES----LSDWRNYFDEKLTIPGESGALNGTINGYLTLPQPD 68
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 26.2 bits (55), Expect = 6.0
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Frame = -2
Query: 500 PPRSNYSFAGAPFP-------PRAKLATPPVIGSERLRLQVPGWRPGEQARRLEGDSAVS 342
PP SNY+ A P+ P++ A PP S R R+ P + PG +
Sbjct: 98 PPSSNYNTAKPPYQTSQFYARPQSSYAPPP---SGRPRISYP-YPPGYMCYKCHNTGYKD 153
Query: 341 SDRPDRDRALRTSQRRDV 288
S RP A R + DV
Sbjct: 154 SGRPCGRCARRFGRSYDV 171
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 74 SREVMRELSTSDTTFTLNPDTNELATKIEEHTNLLLENTKKMVELRET 217
+REV +E+ + T + + ++ A KIEE + + KK +++ET
Sbjct: 211 TREVEKEVPEEEETEEVKNEEDDKAPKIEEVDDESEKKEKKTKKVKET 258
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/68 (22%), Positives = 34/68 (50%)
Frame = +2
Query: 17 VKEAEIELKKEKSKERNSGSREVMRELSTSDTTFTLNPDTNELATKIEEHTNLLLENTKK 196
+ + E+EL+ K +E++ V + +SD +TNE +K++ +L K
Sbjct: 9 ISDHEVELQDAKPEEKSENGNFVFEKAFSSDEEKGSGYNTNETYSKMD--NSLQHRGVSK 66
Query: 197 MVELRETL 220
+ +R+++
Sbjct: 67 IEAVRDSI 74
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.8 bits (54), Expect = 7.9
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 2 TGYQLVKEAEIELKKEKSKERNSG--SREVMRELSTSDTTFTLNPDTN 139
T + L K SK SG ++ VM LST+DTT T + TN
Sbjct: 255 TSHSLTKLPTSSKSLTTSKTTASGHITKGVMEALSTNDTTNTTDDATN 302
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,729,666
Number of Sequences: 5004
Number of extensions: 50510
Number of successful extensions: 246
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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