Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_B13
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   1.1  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   3.4  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   6.0  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   7.9  
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...    26   7.9  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   7.9  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 468 SGCGRCRVWSMFVRYVRFXE 527
           +GCG+  VW  +VR+V F E
Sbjct: 108 NGCGKSYVWPSYVRFVDFDE 127


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -2

Query: 338 ADMGTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 210
           A  GT++ +IST +P      P++VSGH     A R+P+  S+
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 59  PAAEPFQ*SSPRSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVR 190
           P+++PF  SSP  L +S+ R +PK P D+        L   SV+
Sbjct: 99  PSSDPF--SSP--LSSSLHRSSPKRPHDSLGEESPGKLLRTSVK 138


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -1

Query: 246 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 109
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = +1

Query: 607 LDPGPXFSGPFRRIFLXVRSLSVSFPCAIGTILYHRRS---NGQLK 735
           +   P FS  F  IF   + +    PCAI    Y R +   +G+LK
Sbjct: 209 IQAAPSFSSSFPHIFNGAKDIPCLIPCAIDQDPYFRLTRDVSGRLK 254


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -2

Query: 251  RKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQATLGYPVEHSFLKXE 90
            +K   + +P HI LL +  E + + +++ +   SRRR    L    EH  LK E
Sbjct: 1037 QKISEMNIPGHIHLLRELEEEKSNTQRKIAHFESRRRYLTNL---YEHIVLKAE 1087


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,181,352
Number of Sequences: 5004
Number of extensions: 63008
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)