Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_B12
         (933 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    28   1.6  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    27   2.9  
SPCC4G3.17 |||HD domain|Schizosaccharomyces pombe|chr 3|||Manual       27   5.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   5.0  

>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 20/73 (27%), Positives = 36/73 (49%)
 Frame = -1

Query: 459 SLSCNSLIAALRSPLTSSICTAANVNVPPCLSSKLTACDAFPSLTSEDVSTMAARRSSPK 280
           SLS  +  ++L +P T+   + ++V++    S  +++     SLT+   ST A   S   
Sbjct: 527 SLSLTNAKSSLSTPSTTIPTSNSSVSLQTSSSLIISSPIISSSLTATSTSTPALTHSITP 586

Query: 279 SRTSFTQHCLQKS 241
           S TS+T   +  S
Sbjct: 587 SNTSYTSSLIPSS 599


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -1

Query: 435 AALRSPLTSSICTAANVNVPPCLSSKLTACDAFPSLTSEDVSTMAARRSSPKSR 274
           AAL  P T  +C+A++  V   +S+K    ++  S  S + + +AA+  +P  R
Sbjct: 252 AALDHPATDPVCSASSTTVNSAVSTKKRRRES--STISPESAYVAAQLQNPSER 303


>SPCC4G3.17 |||HD domain|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 198

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
 Frame = +2

Query: 122 DSRKRMKAATADG-LEHKLNSRQR-AVITYNQAILSIYSNQPDFCKQCCVKL--VRDFGE 289
           D   R+K     G L H +   +  A   Y   IL++  N P   K+ C+K+  V D  E
Sbjct: 14  DCLSRLKTTPRTGWLYHGIEKPESIADHMYRMGILTMLCNDPSINKERCLKIAVVHDMAE 73

Query: 290 DRRAAIVETSSLVKEGK 340
                I    ++ KE K
Sbjct: 74  SIVGDITPHENVSKEEK 90


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = -1

Query: 483 TTPGRCLYSLSCNSLIAALRSPLTSSICTAANVNVPPCLSSKLTACDAFPS--LTSEDVS 310
           +TP     S +  S+ +   S  TSS+   ++V+  P  S+  T   +  S  LTS + +
Sbjct: 502 STPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLTSVNST 561

Query: 309 TMAARRSSPKSRTSFTQHCLQKSG 238
           T  +  S+P   ++ T      +G
Sbjct: 562 TATSASSTPFGNSTITSSASGSTG 585


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,639
Number of Sequences: 5004
Number of extensions: 44611
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)