Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_FL5_B05
(895 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.17
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 29 1.2
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 27 2.7
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 27 4.8
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 27 4.8
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ... 26 8.3
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 26 8.3
SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|c... 26 8.3
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.5 bits (68), Expect = 0.17
Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 2/174 (1%)
Frame = -3
Query: 677 SSTAPTAHNTVGAAVTRPSPHCAH*TN*TSSTICCRRPLPNNSLWGGTMCACICSSTPGS 498
SS+ P +T + + S ++ +SST P +S + + SS+P S
Sbjct: 165 SSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSS 224
Query: 497 ASGS*KTHD*AKPNNVLRSNSS*RPTYTLICLSTAATLFRRTVMSCSFNSKRVPLPPFLA 318
+S S T +++ ++SS T + + S++++ + S S S
Sbjct: 225 SSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPT 284
Query: 317 RNKATAPAFSIPSSN-LSIDCDI-CESFASINLSRLLIRGSSTPSDTFSVFPTT 162
+T + S SS+ S I S +S + S L S + S +FS PT+
Sbjct: 285 STSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTS 338
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = -3
Query: 380 RRTVMSCSFNSKRVPLPPFLARNKATAPAFSIPSSNLSI-DCDICESFASINLSRLLIRG 204
R ++ N R P P R+ P+F +S+LS+ D+ S + G
Sbjct: 687 RESLRHSRSNMSRSPSPMLSRRSSTLRPSFERSASSLSVRQSDVVSPAPSTRARGQSVSG 746
Query: 203 SSTPSDTFSVF 171
PS + S++
Sbjct: 747 QQRPSSSMSLY 757
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.5 bits (58), Expect = 2.7
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = -3
Query: 359 SFNSKRVPLPPFLARNKATAPAFSIPSSNLSID---CDICESFASINLSRL-LIRGSSTP 192
S + + P P A N T+PA P++ S D D ++ S + GSSTP
Sbjct: 224 SSTATKGPRPTTSASNTNTSPANGAPTNKPSTDINTTDPATQTTQVSASNSPALSGSSTP 283
Query: 191 SDTFS 177
S+T S
Sbjct: 284 SNTSS 288
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 505 QVAHPARKRHTIEQSLTTCFAPIPL 431
++AHP H + QSL +CF + L
Sbjct: 188 EIAHPPSYDHRLHQSLLSCFLVVLL 212
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 26.6 bits (56), Expect = 4.8
Identities = 26/85 (30%), Positives = 39/85 (45%)
Frame = -3
Query: 428 RPTYTLICLSTAATLFRRTVMSCSFNSKRVPLPPFLARNKATAPAFSIPSSNLSIDCDIC 249
RP++TL LS+ A S S P PP ++ AT S+P S D +
Sbjct: 364 RPSHTLSELSSPALTSENL---SSKPSPLFPPPPPRVKSLATNKPVSMPVSTEQSDPSVA 420
Query: 248 ESFASINLSRLLIRGSSTPSDTFSV 174
S +S + ++++GS DT SV
Sbjct: 421 ASSSSSSQLDVVLKGSI--PDTSSV 443
>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 320 ARNKATAPAFSIPSSNLSIDCDICES 243
A ++AP+FS S N S D D C S
Sbjct: 21 ASTVSSAPSFSFVSGNESADLDSCAS 46
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 25.8 bits (54), Expect = 8.3
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +1
Query: 28 MSVRFVRTILVLLAIVHNSRALVDEVVDVLKLGKEIGEEIIASWNVVGKTLNV 186
+S RF+R I +LL+ V SRA +++VDV E+I W V TL++
Sbjct: 42 VSSRFMRLIELLLSKVDRSRA--EDIVDV--------EDIDNRWAEVSDTLDI 84
>SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 147
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 373 PSCRAVSTQNGFLSLRSWPGTRPPHRPSLFPA 278
PS +TQ+ F ++R+W T P + S F A
Sbjct: 108 PSSGRFNTQSTFPTIRNWICTNPNFKLSFFSA 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,496,885
Number of Sequences: 5004
Number of extensions: 69692
Number of successful extensions: 177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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