Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_B05
         (895 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    25   1.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    24   2.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   5.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   5.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.6  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 361 AVSTQNGFLSLRSWPGTRPPHRPSLFP 281
           ++  ++G +S  S PGT   H P+ FP
Sbjct: 382 SIRNRSGLVSGSSTPGTGREHDPAKFP 408


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 737 GSWFCKISSPVDGDLQLTFLG 799
           G W   +++P D D+Q+ F G
Sbjct: 405 GIWHSNLTTPDDPDIQIFFAG 425


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = -1

Query: 610 PIERTELPRRFAAEGPCLTIAYGVEQCARVSAPARQVAHPARKRHTIEQ 464
           P+E + +P +F      LT+A  +   +R +  +R++ +  R R  + Q
Sbjct: 695 PLEPSAVPSKFCLSVTLLTVATSLVIVSRYAEKSRRMLY-LRGREVVAQ 742


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -3

Query: 368 MSCSFNSKRVPLPPFLARNKATAPAFSIPSSNLSIDCDICESFASINLSR 219
           +S +  S     P   +   AT      PS+ + +  DI +S   +NLS+
Sbjct: 830 LSAAATSSTSTSPRPASSTAATLVLSGCPSNMMELQVDIADSQQPLNLSK 879


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/29 (24%), Positives = 19/29 (65%)
 Frame = -2

Query: 828 IQFXDFHQPRPRNVSCRSPSTGEEILQNQ 742
           + + D+ +  PR+++ ++ ST  ++LQ +
Sbjct: 326 LDYHDYSRQFPRDLTTQTVSTTADVLQEE 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,411
Number of Sequences: 438
Number of extensions: 4989
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)