Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_FL5_A17
         (932 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   0.98 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   0.98 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    25   0.98 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   1.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.7  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              23   4.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   5.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   9.2  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.98
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 784 VYFKIHSPKAHS 819
           V FK+H PKAHS
Sbjct: 351 VRFKVHDPKAHS 362


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.98
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 784 VYFKIHSPKAHS 819
           V FK+H PKAHS
Sbjct: 351 VRFKVHDPKAHS 362


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 25.0 bits (52), Expect = 0.98
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 784 VYFKIHSPKAHS 819
           V FK+H PKAHS
Sbjct: 289 VRFKVHDPKAHS 300


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 755 TQELVILIGLCILKFTVPRLIQAPXSSQXGHDHNXP 862
           T  +++L  L +   T P    A  SSQ G+ HN P
Sbjct: 2   TTRILLLFFLLLSSCTRPSRGNAVPSSQRGNVHNDP 37


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 755 TQELVILIGLCILKFTVPRLIQAPXSSQXGHDHNXP 862
           T  +++L  L +   T P    A  SSQ G+ HN P
Sbjct: 2   TTRILLLFFLLLSSCTRPSRGNAVPSSQRGNVHNDP 37


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 36  IHCAWRGFFITDKLVDILCLSVIKCQ 113
           +HC  R  F++D+++      V  CQ
Sbjct: 20  VHCGTRPSFVSDEMIATAASVVNACQ 45


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -2

Query: 541 DGQCLAYNTTHYRDHFVQESWVRVSLGPSRDTLERP 434
           D Q   Y    + +  V  + VRV LGP  D   RP
Sbjct: 514 DHQPYQYKIAVHSEQNVPGAVVRVFLGPKHDHQGRP 549


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 83  VHQLISDKESAPSTMDITQCSRIPXP 6
           +HQ IS K+ +P+T   ++CS I  P
Sbjct: 266 MHQ-ISKKKLSPATPKGSKCSMITTP 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,500
Number of Sequences: 438
Number of extensions: 4941
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30476628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)