Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_P24
(802 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 108 8e-25
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 72 8e-14
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 42 1e-04
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S... 27 3.1
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 26 5.4
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 26 7.2
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 26 7.2
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces... 25 9.5
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 25 9.5
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p... 25 9.5
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 108 bits (260), Expect = 8e-25
Identities = 47/130 (36%), Positives = 77/130 (59%)
Frame = -3
Query: 782 MPECXLGSMXXXXXXXXXXXXXXXXNTDSDPARXGKPVVVIDDCQFHQCVKLSKFETEHS 603
MPEC G N +P+ V+++DCQFHQCV+L +FE EH
Sbjct: 216 MPECQFGLNDKLDFKLKQSESKSKSNNSRNPSSVNGGFVILEDCQFHQCVRLPEFENEHR 275
Query: 602 ISFIPPDGEFELMRYRTTKDISLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEV 423
I+FIPPDGE ELM YR+ ++I++PFR++P+V ++ + K+ ++ +++++ P L +
Sbjct: 276 ITFIPPDGEVELMSYRSHENINIPFRIVPIVEQLSKQKIIYRISIRADY-PHKLSSSLNF 334
Query: 422 KIPTPLNTXR 393
+IP P N +
Sbjct: 335 RIPVPTNVVK 344
Score = 84.6 bits (200), Expect = 1e-17
Identities = 45/97 (46%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Frame = -1
Query: 373 KGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMGFEV-PFAPS 197
+GKA Y+ SEN I WKI R G E AE+EL T ++ W +PPIS+ F + F S
Sbjct: 351 RGKAGYEPSENIINWKIPRFLGETELIFYAEVELSNTTNQQIWAKPPISLDFNILMFTSS 410
Query: 196 GFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 86
G V+YL+V EP + S + IKWVRY R+G E R
Sbjct: 411 GLHVQYLRVSEP--SNSKYKSIKWVRYSTRAGTCEIR 445
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 72.1 bits (169), Expect = 8e-14
Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Frame = -3
Query: 668 VVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDISLPFRVIPLVREV-GRT 492
V ++D +FHQCV+L++FE + +ISFIPPDGEF+LM YR + ++ P + V +
Sbjct: 231 VEMEDVKFHQCVRLARFENDRTISFIPPDGEFDLMSYRMSSNVR-PLIWVECESIVHSGS 289
Query: 491 KMEVKVVLKSNFKPSLLGQKIEVKIPTP 408
++E V K+ FK + +++ IP P
Sbjct: 290 RIEFMVKAKAQFKKRCIANNVQIIIPVP 317
Score = 68.5 bits (160), Expect = 1e-12
Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Frame = -1
Query: 370 GKAKYKASENAIVWKIKRMAGMKETQLSAEIEL--LETDTKKKWTRPPISMGFEVP-FAP 200
G +Y + A+VW IK+ AG KE + AE+ L ++ + + + P+ + F +P F
Sbjct: 330 GHVQYAPEQAAMVWNIKKFAGGKEFFMRAEMGLPSVKNEDIQVQKKRPVQLKFAIPYFTT 389
Query: 199 SGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSG 101
SG +VRYLK+ EPKLNY + WVRY+ ++G
Sbjct: 390 SGIQVRYLKITEPKLNY---HAMPWVRYVTQNG 419
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 41.5 bits (93), Expect = 1e-04
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Frame = -3
Query: 677 KPVVVIDDCQFHQCVKLSKFETE-HSISFIPPDGEFELMRYRTTKDISLPFRVIPLVREV 501
+P + + +FHQ V L +++ I FIPPDG+F L ++T D + + +P+V E
Sbjct: 222 RPGTKLGNVRFHQSVNLKRWKQHPDQIEFIPPDGKFTLASFQT--DFATQ-KSLPVVVE- 277
Query: 500 GRTKME--VKVVLKSNFKPSLLGQKIEVKIPTPLNT 399
+ K++ +V +++ K S+ KI + IP L +
Sbjct: 278 AKNKLDGRFEVRIRNTGKKSVENLKILITIPQALKS 313
>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -1
Query: 322 KRMAGMKETQLSAEIELLETDTKKKWTRPPISMGFEVPFAPSGFKVRY 179
K++ + TQ+ +ELL T T+++W P + + S F+VRY
Sbjct: 229 KKVVPFQSTQMLRIMELLGTPTEERW---PGLKNYPEYYQLSSFEVRY 273
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 214 VPFAPSGFKVRYLKVFEPKLNYSDHDVIKW 125
VP+ + + YLK+F K N S D+ +W
Sbjct: 206 VPYFSTAWFQFYLKLFSQKDNVSSSDLTRW 235
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 412 LR*TPXGVQLICLKGKAKYKASENA 338
LR P V+ + L+GK Y + ENA
Sbjct: 170 LRLNPKNVEALVLRGKVMYYSGENA 194
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 629 LSKFETEHSISFIPPDGEFELMRYRTTKDISLPFRV 522
L KF+TE + D L Y +KDIS FRV
Sbjct: 409 LFKFDTEDEVVAWANDSPVGLAGYLFSKDISRVFRV 444
>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +2
Query: 137 VMVRVIQFRFKHLQIADLESGGCKGNFEP 223
+ R++ R H I +E CK +EP
Sbjct: 53 IFARILDARAGHFSITPIEQTSCKQMYEP 81
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 131 DDVMVRVIQFRFKHLQIADLESGGCKGNFEPHGD 232
DD ++ +I+ +F+HL + + GG G+ GD
Sbjct: 149 DDALLLMIEHKFRHLPV--VSDGGPDGSAGDEGD 180
>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 9.5
Identities = 18/71 (25%), Positives = 26/71 (36%)
Frame = +3
Query: 321 LIFHTIAFSEALYFAFPFKQISCTPXGVQRSWNLHFDLLSEQGGLEVTLQHNLDFHLGAA 500
L F T + Y P + Q+ W L + S G V L H+ + + A
Sbjct: 124 LTFTTASQGLNQYLGLPLPPTDGSKNSAQQKWVLVWSGSSSVGQYVVQLAHHAGYKVIAT 183
Query: 501 HLPHERDDAKR 533
PH D K+
Sbjct: 184 CSPHNFDWIKK 194
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,180,392
Number of Sequences: 5004
Number of extensions: 64302
Number of successful extensions: 187
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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