Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_P24
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       28   0.088
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.35 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   4.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   7.6  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 28.3 bits (60), Expect = 0.088
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 320 FDLPHDSVLRGFILRFPLQANQLHPXW 400
           FD   D+ LRG ++R   QANQ  P W
Sbjct: 555 FDPEEDAPLRGDLVRILKQANQSVPDW 581


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 222 GSKFPLHPPDSRSAI*RCLNRN*ITRTMTSSSGCATS 112
           GS+ PLHPP S +++   +     T T T+++  AT+
Sbjct: 90  GSR-PLHPPASSTSLPATITTTTTTTTTTTATAAATA 125


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 211 PFAPSGFKVRYLKVFEPKLNYSDHDVIKW 125
           PF PSG  ++ +     +LN+   D+ +W
Sbjct: 285 PFRPSGTVLKDINRQVDELNFDIQDLERW 313


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = -3

Query: 539 SLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPLN 402
           SLP+     +  +   +M +   + S +     G+KI++  P  LN
Sbjct: 317 SLPYYKYKYLNVINALEMRLMDAIDSGYLIDEYGKKIDIYTPEGLN 362


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = -3

Query: 539 SLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPLN 402
           SLP+     +  +   +M +   + S +     G+KI++  P  LN
Sbjct: 317 SLPYYKYKYLNVINALEMRLMDAIDSGYLIDEYGKKIDIYTPEGLN 362


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 338 SVLRGFILRFPLQANQLHPXWCSAELESSLRSSV 439
           S++   ILR+  + +   P W S+  ES L+S +
Sbjct: 320 SLMLTSILRYLQELHVDAPTWISSVTESVLKSKI 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,107
Number of Sequences: 438
Number of extensions: 4948
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)