Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_P21
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|...    30   0.34 
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    28   1.4  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    27   3.2  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   3.2  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    26   5.6  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   5.6  
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces...    26   5.6  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   7.4  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    25   9.7  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   9.7  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    25   9.7  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   9.7  

>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = -1

Query: 653 YTNHPRLNIHFHQSPDAVLEGVHAGVKPPLSSEAPSAYLTPSSLGMAKGVSPPY-FQVND 477
           + N P   + F      ++ GV     PP SS+ P  Y+       AKG+S  Y   VND
Sbjct: 14  WENKPEEVVEFPSQGKFIIVGVPGAFTPPCSSQVP-GYIANEKQFAAKGISGIYVVAVND 72


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 104 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 232
           R +A  Y+  + LGG++ S+    EK  F  + N  DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 259 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 164
           CY   P + + L ++I+T+L DN   ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = -2

Query: 358 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 179
           K K+ D   V  K   +  +S   T+ +V +   YF   PF+ V+       +K + T  
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664

Query: 178 LSASIQASLPSSEIYRQL 125
           +      +  SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -2

Query: 712 KPPSPAXSGTSTRSSNPRFHTPTTPDLTSISINPLTPY 599
           +PPS A   +   +  P    P  P +  +  NP TP+
Sbjct: 245 RPPSMALLPSKQSTYWPALAAPVYPSMKDVPNNPFTPF 282


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
 Frame = -2

Query: 757 PXSFXIXXXVSPLCIKP---PSPAXSGTSTRSSN---PRFHTPTTPDLTSISINPLT 605
           P  F        + ++P   P P+ S T+T SS       H PTTPD     + PLT
Sbjct: 253 PTPFESHGPAKQISVQPSEHPKPSISTTTTGSSYRSAESSHAPTTPD--HFKLTPLT 307


>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -1

Query: 659 IPYT--NHPRLNIHFHQSPDAVLE-GVHAGVKPPLSSEAPSAYLTPS 528
           +PYT  NHP+ +I FH   + V +       KP ++S+A +A +  S
Sbjct: 27  LPYTARNHPQFSIWFHNDFEPVKDLKALLKDKPQIASQAVTALVNVS 73


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 146 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 48
           L++L  +G  SPC  RL   L  +++P    FW
Sbjct: 21  LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 334 LVTHKELALKVSSIIGTRVYVFDPSCY 254
           +V H E  LKV  II T  Y  D S Y
Sbjct: 37  VVKHHEEFLKVCDIISTFTYQLDASIY 63


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +1

Query: 472 DSSFT*K*GGETPLAMPSDEGVRYADGASDDNGGFTPA*TPSS 600
           +SSF    G  TPL    D G  YAD A+  N    PA TP +
Sbjct: 160 NSSFVGNSGSGTPL--DGDSGSFYADSANLTNREPYPAWTPEN 200


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 722 LMHQATLPCDXGYINPIIKSPIPYTNHP 639
           + HQA L C  GY + +    +P+ N P
Sbjct: 348 ICHQAILRCIYGYYHNLSLEELPFINVP 375


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 119 IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 220
           ++Q A+ LG   RS  RC  KSSF+    + DVV
Sbjct: 33  LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,097,515
Number of Sequences: 5004
Number of extensions: 64484
Number of successful extensions: 204
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)