Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_P21
(815 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 32 0.63
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 1.1
08_02_1296 - 25951758-25951983,25952134-25952159,25952626-259527... 30 1.9
12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225... 29 3.3
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452... 29 3.3
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.4
06_03_1310 + 29238644-29240260 29 4.4
11_06_0610 - 25449085-25453284 29 5.8
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.8
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 5.8
04_04_1527 - 34167673-34168245 28 7.7
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 31.9 bits (69), Expect = 0.63
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = -2
Query: 715 IKPPSPAXSGTSTR-SSNPR--FHTPTTPDLTSISINPLTP 602
I PPSPA + S+R S +PR F TP T T+ S +P +P
Sbjct: 25 ITPPSPASTPRSSRPSESPRSGFSTPATAPRTAASPSPPSP 65
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -2
Query: 697 AXSGTSTRSSNPRFHTPTTP 638
A S T+TR S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>08_02_1296 -
25951758-25951983,25952134-25952159,25952626-25952710,
25952828-25952959,25953037-25953180,25953254-25953312,
25953381-25953687,25954211-25954292,25954369-25954502,
25954587-25954680,25954751-25954874,25955136-25955195
Length = 490
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = -2
Query: 721 LCIKPPSPAXSGTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFTPG*SLRCHQRL 551
L I PSPA + T ++N +H P DL+ P T EF+PG + +CH+++
Sbjct: 329 LHIDQPSPAIANTIQVATNQLYH-PQQVDLSKEK-QPST----EFSPGQNSKCHKKV 379
>12_01_0298 -
2250517-2251235,2251331-2251577,2251615-2252951,
2256029-2256188
Length = 820
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 727 SPLCIKPPSPAXSGTSTRSSNPRFHTPTTPD 635
SP + P +PA S +S SS+P TP + D
Sbjct: 326 SPQSVVPSNPAASSSSVASSSPALATPESRD 356
>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
4521632-4521723,4522226-4522342,4522641-4522704,
4523175-4523228,4523579-4523666,4523788-4524023,
4525258-4525478,4525634-4525827,4525938-4525995,
4526771-4526824,4526851-4527473,4527580-4527640,
4528417-4528590,4528803-4529063,4529201-4529320,
4529388-4530022,4530062-4530828,4530915-4531012,
4531101-4531155,4531230-4531318
Length = 2010
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 638 RLNIH-FHQSPDAVLEGVHAGVKPPLSSEAPSAYLTPSSLGMAKGVSPPYFQVNDESQAS 462
R +H F + + V+ G HA KP L ++AP L + + VSP Q+++ + +
Sbjct: 986 RSEVHQFDSNGNIVINGQHAAKKPKLMNQAPDVSL-EALTPVGPMVSPAASQMSNMANPT 1044
Query: 461 RLI 453
++I
Sbjct: 1045 KII 1047
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 85 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 186
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>06_03_1310 + 29238644-29240260
Length = 538
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -1
Query: 668 KSPIPYTNHPRLNIHFHQSPDAVLEGVHAGVKPPLSSEAPSAYLTPS-SLGMAKGVSPP 495
+SP+P+ PR P + H PP SE+P + + PS S + G SPP
Sbjct: 382 RSPLPHHMPPRRTPPTPPPPSSPTPS-HLPPPPPTYSESPKSSMPPSTSPPSSHGASPP 439
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -2
Query: 709 PPSPAXSGTSTRSSNPRFHTPTTPDLTSIS-INPLTPY*KEFTP 581
PP+P +S P HTP+ P+ T S +P TP K +P
Sbjct: 618 PPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSP 661
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 77 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 223
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -2
Query: 244 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 65
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 64 ILHSF 50
+LHSF
Sbjct: 1408 LLHSF 1412
>04_04_1527 - 34167673-34168245
Length = 190
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -1
Query: 671 IKSPIPYTNHPRLNIHFHQSPDAVLEGVHAGVKPPLSSEAPSAYLTPSSLGMAKGVSP 498
++ P+ TN P ++ SP L G A PP++ A SA T S +G P
Sbjct: 61 LRGPLARTNFPLVSSLPLPSPHYHLPGKAAAAAPPVAGPACSASSTVESSSGPRGPRP 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,057,789
Number of Sequences: 37544
Number of extensions: 502571
Number of successful extensions: 1558
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1553
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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