Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_P18
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom...    29   1.0  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    27   2.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.2  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    27   4.2  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    26   7.4  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    25   9.7  

>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 288 PRYTFPQSGRGNAVYHHPAS-YCG 356
           P Y   +SG+G+ VY HP S  CG
Sbjct: 49  PYYFIEKSGKGSVVYFHPTSDLCG 72


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
 Frame = +3

Query: 489 LRSEEGFPSLAPPPPSARWCTRRSRA*PSMTHRCQASTPRR----QAATSQVLSLRXGHG 656
           + +E G P     PP AR   +R R+ PS++     S   R      A + +L     H 
Sbjct: 321 VENEAGVPRKRGRPPGARNKIKRLRSEPSVSLTLSISWYERFEKLMHAQNTMLRSAFSHV 380

Query: 657 AALPSGADSERMLRRVQVVSQW 722
           A LP    S+ +    + +SQ+
Sbjct: 381 ARLPMETVSQLLSHYTETISQY 402


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 1/124 (0%)
 Frame = +1

Query: 34   AGSPPARQVGYVGVEPH*KLLPLTTGALPRTGPEPSRGY*NGETGXDAEHITSIPPSHGT 213
            +G+PP  +   V   P    +P  +  +P   P+P+ G        +A  +    PS G 
Sbjct: 1156 SGAPPVPKPS-VAAPP----VPAPSSGIPPV-PKPAAGVPPVPPPSEAPPVPK--PSVGV 1207

Query: 214  PDRWPPAKRPPVPSXQRAESPL*WRRVTPSPRAVGGTRSTITRLPIAGERAEHATPRLG- 390
            P   PP+  PPVP+      P+      P P A    ++     P + E    +TPR   
Sbjct: 1208 PPVPPPSTAPPVPTPSAGLPPV------PVPTA----KAPPVPAP-SSEAPSVSTPRSSV 1256

Query: 391  PSPH 402
            PSPH
Sbjct: 1257 PSPH 1260



 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 175  AEHITSIPPSHGTPDRWPPAKRPPVPSXQRAESPL 279
            +  I SIP   G P    P+  PPVP    A  P+
Sbjct: 1070 SSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPV 1104


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
 Frame = +2

Query: 302 PPERS----GERGLPSPGFLLRVSVQSTPPL 382
           PP+ S    G  G PSP   L VS  +TPPL
Sbjct: 234 PPKTSMPPFGSAGSPSPNRSLNVSNNTTPPL 264


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 566 IAFHDSSLPSIDATTPGSDKSGPIFAXRTRRCT 664
           I FH+   P +DAT   S + G  F  +   CT
Sbjct: 639 ILFHELPPPGLDATAYSSWEKGDNFVTKKNVCT 671


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 327 VYHHPASYCG*ACRARHPSSGSLPAQNG 410
           +YH  +SY   +C A +   G  PA+ G
Sbjct: 98  IYHGYSSYTASSCTAIYECEGDYPARTG 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,183,714
Number of Sequences: 5004
Number of extensions: 63153
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)